Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02243 ATGGCTAGGAGAAAGAAAGTGACACTAAAACTGATTGAGAATTTTGTGGCAAGAAAAGCTCGTTACAGAAAAATTCGAGAAAATTTATTGAAGAAGGTGGAAGATCTTACGACCCTTTGTGATGTGAATGCATGTGCAATGATCTATGGTCCAGGGGACGACGTGCCAACTGTGTGGCCATCCCATGATATTGCTAAAGAGTTGCTCGACAAGTTTGAGAATGCTCCATTGCCAGAACGACTGAAAAAAAATGTTACTCCACAACTTTATATCGACCAGATGAACAGAAAGATTGAAAAACAAGTCATGAAACTGAAGAAGAAGAACGATGAGAAAGACATGTCAAATTTCTTGCACAAAATACATGATGGTAAGTCTTTATCAGATCTTGATGCTACCGATATACGTCGTTTACTTTGTTACGTGGAGGCAAAATTGAAGTGTGTTGGAGTAAAAGTTCATATTTCTGAACAACAGTTATCAACTAAAACTCCGACACCACTGGTTTCTTTTCCTCTGCATAATGACATTGATTCTTGTTCTAACATAGATCAACAAGTTTTTCAACAAAAATCATCCTTAGATTCAACGAAAGAAACTGGTCCAATGAATACTGATTCCGATAATAATAAGAATACGGGACTACCACCACTACAGCAACACACACATGATAATACGGGGTTGTCTCAAGTTAATTTTGAAAGTTTGAATTTGGATGATCTTGGGCTTTTATATGGGAGTTCTTCAGGTGAAATTACAGGCAATGACATATGGTCATCTTATGAAAGTTTTGGAGACATAAGTGAAAGTGATACGATGTTTCCCTTCAACAATAATGTTCAAGACAACATTGAGGAAACTTTCATGGGAGCAAACGTTGAAAATGAAGGTGTCTCCATTAATAATATAGAGTTAAGTGGTGATCAAAGAACTACCAGTGGATGA 945 0.3683 MARRKKVTLKLIENFVARKARYRKIRENLLKKVEDLTTLCDVNACAMIYGPGDDVPTVWPSHDIAKELLDKFENAPLPERLKKNVTPQLYIDQMNRKIEKQVMKLKKKNDEKDMSNFLHKIHDGKSLSDLDATDIRRLLCYVEAKLKCVGVKVHISEQQLSTKTPTPLVSFPLHNDIDSCSNIDQQVFQQKSSLDSTKETGPMNTDSDNNKNTGLPPLQQHTHDNTGLSQVNFESLNLDDLGLLYGSSSGEITGNDIWSSYESFGDISESDTMFPFNNNVQDNIEETFMGANVENEGVSINNIELSGDQRTTSG 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02243 314 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 54 IPR002100 GO:0003677|GO:0046983
Vimu6g02243 314 Coils Coil 91 111 - -
Vimu6g02243 314 CDD MADS_SRF_like 4 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vimu6g02243 314 MobiDBLite consensus disorder prediction 189 225 - -
Vimu6g02243 314 SMART madsneu2 2 61 IPR002100 GO:0003677|GO:0046983
Vimu6g02243 314 SUPERFAMILY SRF-like 4 88 IPR036879 GO:0003677|GO:0046983
Vimu6g02243 314 Gene3D - 16 100 IPR036879 GO:0003677|GO:0046983
Vimu6g02243 314 ProSiteProfiles MADS-box domain profile. 2 50 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02243 Vimu-Chr6 19598001 19599056 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02243 4 170 Type I MADS-box Gene Family AT1G65300 30.000 3.97e-23 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vimu6g02243 SRF-TF 1.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02243 - - var:108328520 566.614