LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu6g02239	ATGAGCAGCAACACTGCAGTTAATTCCCCTGGATTCCTCGGCTCAAGCAACATCAGTGGCTACAGTTATGGCATAGGAATCTCCATTGGAATTCTGTTGCTCATCATAACTATCACTCTAACTTCCTACTTCTGCACCAGAACACATGTCTCATTTGCTCCAGCTGCCAGGAACAGAACATTCACTCCGAATGCTCTTCAACCAAACCACTCTGTTGTTGATGTCAGTTTGGATGAAGCCACCATTCTGAGTTATCCAACCCTGCTATACTCTGAAGCCAAAACTCAGAAGTCTGATTCCACTGCAACATGTTGCTCCATTTGCTTGGCAGATTACAAGGACACTGATATGCTTCGCATGCTACCTGATTGTGGACACCAATTCCACCTCAAATGCATAGATCCATGGTTGAGATTGCATCCCACTTGTCCAGTTTGTAGAACATCTCCGATTCCAACACCCCTTTCAACTCCTCTGGCTGAAGTGGTTCCATTTGCTACTGTACGAGATTCATAG	516	0.4516	MSSNTAVNSPGFLGSSNISGYSYGIGISIGILLLIITITLTSYFCTRTHVSFAPAARNRTFTPNALQPNHSVVDVSLDEATILSYPTLLYSEAKTQKSDSTATCCSICLADYKDTDMLRMLPDCGHQFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEVVPFATVRDS	171

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu6g02239	171	CDD	RING-H2_EL5-like	104	147	-	-
	Vimu6g02239	171	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	64	151	IPR013083	-
	Vimu6g02239	171	FunFam	E3 ubiquitin-protein ligase ATL6	66	152	-	-
	Vimu6g02239	171	Pfam	Ring finger domain	105	147	IPR001841	-
	Vimu6g02239	171	PANTHER	TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED	12	161	IPR045899	-
	Vimu6g02239	171	ProSiteProfiles	Zinc finger RING-type profile.	105	147	IPR001841	-
	Vimu6g02239	171	SMART	ring_2	105	146	IPR001841	-
	Vimu6g02239	171	SUPERFAMILY	RING/U-box	86	152	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu6g02239	Vimu-Chr6	19584731	19585643	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu6g02239	11	167	C3H Transcription Factor Family	AT2G35910	61.006	1.79e-56	175

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu6g02239	-		-	vun:114162275	275.018

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu6g02239	6	19584731	19585643	Vimu3g00219	3	1833407	1833910	PCT