Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02231 ATGGGAAACAATTGTGTCGGGTCAAAAATCTCGGATTATACACTGTTTTCCTGTATTTTTCCCAGTTCGTTGGTGTGGCCTCATGGTCATCAAATGGTGGTCACAGAAATTTCTGATCCAACTTCACTTGTGACTAAAATTGAAGAAAAAAATGCTCCAGAGAATGTTCAGGAAAAGCCTCCACGAGTGGTGAAAATTAACAAAGAGATTAACATGCCTTCGGAGCCTGCAAATAAAAAAATAGCCCGTAAAGTCAAGAGGGTAGCCATAGGGCTTCGAGAAGAATCAATTTTGAAGAGAAAAAGTGGTCACTTTAAGGAGTACTATAATTTGGGAGAAGAGCTTGGAAAGGGACAATATGGAACAACATTCCTGTGTACTGAGAAAGCAACTGGGAAAAAGTACGCTTGCAAGTCCATTCCAAAAGTGAAACTGCTGATAGATGAAGACGTGGAAGATGTGAGGAGGGAGATTGAGATAATGCATCACTTGGATGGGTGCCCTAATGTGATATCAATTAAAGGGGCTTTTGAGGATGGTGTTGCAGTTCATGTTGTGATGGAGTTATGTGAAGGGGGTGAACTTTTTGATAGGATTGTGGAAAGGGGGCATTACACAGAGAGAAAAGCAGCTGAACTTGCAAGGATTATAGTTAGTATTATAGAAGGTTGCCATTCCCTCGGGGTGATGCATCGTGATCTTAAACCTGAGAATTTTCTTTTTGTTGATGGGAATGAAGAGTCCACACTTAAGGCCATAGATTTTGGAATGTCTGTTTTCTTCAAACCAGGTTTGGATCAAATGTTCGTTTCCTTCCTTTGCCCCTCCCTGCTAGACAACCAAATTATAATATAG 855 0.407 MGNNCVGSKISDYTLFSCIFPSSLVWPHGHQMVVTEISDPTSLVTKIEEKNAPENVQEKPPRVVKINKEINMPSEPANKKIARKVKRVAIGLREESILKRKSGHFKEYYNLGEELGKGQYGTTFLCTEKATGKKYACKSIPKVKLLIDEDVEDVRREIEIMHHLDGCPNVISIKGAFEDGVAVHVVMELCEGGELFDRIVERGHYTERKAAELARIIVSIIEGCHSLGVMHRDLKPENFLFVDGNEESTLKAIDFGMSVFFKPGLDQMFVSFLCPSLLDNQIII 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02231 284 ProSitePatterns Protein kinases ATP-binding region signature. 115 138 IPR017441 GO:0005524
Vimu6g02231 284 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
Vimu6g02231 284 PANTHER SERINE/THREONINE-PROTEIN KINASE 97 263 - -
Vimu6g02231 284 SMART serkin_6 109 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g02231 284 ProSiteProfiles Protein kinase domain profile. 109 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g02231 284 Pfam Protein kinase domain 109 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g02231 284 SUPERFAMILY Protein kinase-like (PK-like) 107 265 IPR011009 -
Vimu6g02231 284 Gene3D Transferase(Phosphotransferase) domain 1 185 276 - -
Vimu6g02231 284 FunFam Calcium-dependent protein kinase 1 111 194 - -
Vimu6g02231 284 Gene3D Phosphorylase Kinase; domain 1 88 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02231 Vimu-Chr6 19527252 19528106 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02231 32 278 EF-hand Containing Proteins AT3G10660 58.893 1.98e-95 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vimu6g02231 Pkinase 1.8e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02231 K13412 - gmx:100814475 408.297