Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02226 AAAGTTGTAGAGATGGAAGACAATAAAGAAAGTAAAATGATATCGGCTGCGGCCTTTGTAGAAGGGGGGATTCAAGACTCCTGTGATGATGCTTGCAGCATATGTCTTGAGGAGTTTTCTGCAAGTGATCCTTCAACGCTCACTAATTGCAAGCATGAGTTTCACCTACACTGCATTCTCGAATGGTGTCAGAGAAGCTCCCAGTGTCCTATGTGTTGGCAATCTATTAGCTTGAAGGATCTTACTAGTCAGGAATTGTTTGAGGCAGTAGAGCGGGAGAGGAAGTTGAGGGTTGCCACATCAAGAAATGCTTCTATTTTTCATCACCCTGCATTATTGCAGCACTTGCGCATGAATGTAAATGATATTGAGCTTGAAGAGCAAATTATTCAACATTTAGCTGTTGCTGCAGCTATGAGGAGAGCAGACCAACTTGGCCGTAGGGCAGGACGACAAGCTAATTCATCACCTCGTGGTCATCCACACTCATTAGTGTTATCTAATATGGCACCTGCTGAAGAAGAAAATGACCAAACGAGAATTCCTAATACAAGTGCATCTACTCCAATAAAATCTGAGAGAAATGGAGCATTGCAACAGATGCTGCGAGTTCGAACTCAAAGCTCTTCTTCAGCTTCTGGATCTAGAATTTACTCCAATGATAGAGGCTCTACTACTCCCTCGCCATCAGTAAACGGCGATAAAGCAGAGTTCCAGTCACATTCTGATTCGCTGCGGTCCAGACTCAATGCGGTGTCTGCGAGATACAAAGAATCAATCTCAAAGGGTGCAAGGGGATGGAAGGAAAGGTTGTTCTGTCGTAGTTGTTCCATGTCAGAACTTGGTTCAGAAACAAGGAGGAGAGAGATGAATTCTGATATTTCTAGTGTATCCCGACTAAAGGAATCCCTTGAATCTAGTGAGAATAGTAAAGCTGTGGGTACTTCTTTGTCTAGTCATATGGAGGATTGTTCCATTGGAGAGGTGAGCAATCACAATGATGTTGAAGTTAGCGGGGAGACCTCTTCACATGATGACAATACTCCACCTGCTTGTTCTGCTACCTCACATTTAAATTGA 1080 0.4333 KVVEMEDNKESKMISAAAFVEGGIQDSCDDACSICLEEFSASDPSTLTNCKHEFHLHCILEWCQRSSQCPMCWQSISLKDLTSQELFEAVERERKLRVATSRNASIFHHPALLQHLRMNVNDIELEEQIIQHLAVAAAMRRADQLGRRAGRQANSSPRGHPHSLVLSNMAPAEEENDQTRIPNTSASTPIKSERNGALQQMLRVRTQSSSSASGSRIYSNDRGSTTPSPSVNGDKAEFQSHSDSLRSRLNAVSARYKESISKGARGWKERLFCRSCSMSELGSETRRREMNSDISSVSRLKESLESSENSKAVGTSLSSHMEDCSIGEVSNHNDVEVSGETSSHDDNTPPACSATSHLN 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02226 359 MobiDBLite consensus disorder prediction 172 245 - -
Vimu6g02226 359 ProSiteProfiles Zinc finger RING-type profile. 32 72 IPR001841 -
Vimu6g02226 359 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 18 80 - -
Vimu6g02226 359 SUPERFAMILY RING/U-box 25 79 - -
Vimu6g02226 359 MobiDBLite consensus disorder prediction 282 359 - -
Vimu6g02226 359 Pfam Ring finger domain 31 72 IPR001841 -
Vimu6g02226 359 SMART ring_2 32 72 IPR001841 -
Vimu6g02226 359 MobiDBLite consensus disorder prediction 296 359 - -
Vimu6g02226 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 103 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02226 Vimu-Chr6 19504953 19509842 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02226 29 80 C3H Transcription Factor Family AT4G00335 44.231 1.48e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02226 K19043 - gmx:100800419 490.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02226 6 19504953 19509842 Vimu6g02226 6 19504953 19509842 ECH
Vimu6g02226 6 19504953 19509842 Vimu3g00229 3 1991200 1995287 PCT