Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02206 ATGGCTTCGAGATTCTGGACTCAGGGTGGGAGTGATTCCGAGGAGGAGGAGAGTGATTACGATGAGGAGGTTGAAACCGCGGCAGGTGAATCTGCTAGTCAAGCAGTGACAAGCAGGTACCTGCAGGAAAATGCTAGTGACAGTGATGATTCTGATGGGCAGAAGCGTGTTGTGCGGTCGGCGAAAGATAAGCGTTTCGAGGAGATGGCGTCCACTGTTGATCAGATGAAGAATGCCATGAAGATTAATGATTGGGTGAGCCTGCAAGAGAGCTTTGACAAGATTAACAAACAGCTTGAGAAGGTTATGCGTGTTACTGAGTCTGTGAAAGTTCCGAATCTCTACATCAAGACGCTTGTGATGTTGGAAGATTTCTTGGCTCAGGCCTTGGCTAATAAGGATGCCAAGAAGAAGATGAGCAGTAGCAATGCTAAGGCTCTGAACACCATGAAGCAGAAACTAAAGAAAAATAATAAGCAGTACGAGGATTTGATTAATAAGTGTAGGGAGAATCCCGAGAGTGACGAGGAGAAGGAAGAAGAGGAGAGCGAGGAAGAGTATGAGAGTGATGATGAGATTATTGAGCCAGAGCAGCTTCGGAAGCCAGAAGCAAAATCTGATTCTGAAGCCTCTCAGTATGATGATGAAAAGCAGGATGCTGGTGATGGTCCTTGGGACCAAAAGCTTAGCAAGAAGGATCGGCTATTGGATAGACAATTTATGAAAGACCCCAGTGAGATCACATGGGACACGGTAAACAAGAAATTCAAAGAGGTTGTGGCTGCTAGGGGCAGAAAGGGGACTGGGAGATTTGAACAGGTTGAGCAGCTCACTTTCTTAACGAAAGTTGCTAAGACACCTGCACAGAAGTTGGAAATTCTGTTCAGTGTGGTTTCTGCTCAATTTGATGTCAATCCTGGGCTCAATGGACATATGCCCATAAATGTGTGGAAAAAATGTGTGCAAAACATGCTGGTCATTCTTGATATTCTAGTGCAGCATCCAAACATATTGGTTGACGATTCGGTGGAACCAGATGAGAACGAAACTCAGAAAGGGGCTGACTATAATGGACCAATTCGGGTATGGGGTAACTTAGTTGCTTTCTTAGAAAGAATTGACGTTGAGTTTTTCAAGAGCTTGCAGTGCATAGATCCTCATACACGGGACTATGTTGAGAGACTCAGGGATGAGCCCTTGTTTCTGGTTCTTGCTCAAAATGTCCAGGAATATCTTGAAAGAGTTGGGAATTTCAAAGCTGCCTCTAAGGTGGCCTTGAGGAGAGTTGAGCTCATTTACTACAAACCGCAAGAAGTTTATGATGCAATGAAAAAATTGACTGAGCTGACAGAGAATGGAGATGATGCAGGGGAGACAAGTGAGGAGCCAAAAGGATTTGAGGAATCAAGAATTCCTACTGCATTTATTGTTACCCCAGAGATTGTGGCCCGGAAGCCCACATTCCCTGATAATAGCAGGACCATAATGGATATATTGGTATCATTGATATACAAGTACGGAGACGAGCGAACTAAAGCACGTGCAATGCTCTGTGATATATACCACCATGCTCTCCTTGATGAGTTCTCAATTGCCCGTGATCTGCTTCTTATGAGTCATTTGCAAGATAGTATTCAACACATGGACATTTCAACGCAGATACTTTTTAACAGGGCTATGTCACAGTTAGGTTTATGTGCTTTTCGGATTGGACTGATTTCTGATGCTCATGGTTGTCTCTCTGAACTGTACTCTGGTGGAAGGGTAAAAGAGTTACTTGCCCAAGGTGTGTCACAAAGTCGCTATCATGAGAAGACTCCCGAACAGGAAAGGTTGGAACGAAGGAGGCAAATGCCATATCATATGCACATCAATCTCGAACTCCTGGAGTCAGTACATCTGGTATCTGCCATGCTGCTGGAAGTTCCTAATATGGCAGCCAATGTTCATGATGCTAAACGCAAGGTAATTTCTAAGACATTCCGTCGCTTGCTTGAGACCAGCGAGAAGCAAACATTCACTGGTCCACCGGAAAATGTGAGAGATCATGTTATGGCTGCCACAAGGTTTCTCGTAAAGGGAGACTTCCAGAAGGCTTTTGACATTATTGTGTCTCTCGATGTATGGAAATTTGTGAGAAATCGAGACACTGTGCTTGAAATGCTGAAAGACAAAATCAAGGAGGAGGCATTGAGGACATACCTCTTCACCTTCGCTTCTTCTTATGAATCCCTGAGCCTGGATCAACTTTCAAAATTTTTTGATCTCTCTGTTTCTTGCACTCATAGTATTGTCAGTAGGATGATGATCAATGAGGAGCTCCATGCAAGCTGGGACCAGCCAACTGGGTGTGTTGTTTTCCAAGATGTTGAATACTCCAGGCTGCAGGCATTGGCATTCCAGTTGACAGAGAAATTATCTATCCTTGCAGAGAGCAATGAAAGAGCAACGGAAGCAAGGATAGGTGGTGGTGGATTGGATCTGCCTCTAAGGCGGAGAGATGGCCAGGACTATGCCGCAGCCGCTGCCGGTGGTAGTGGAACAGCCTCTTCAGGTGGTAGATGGCAAGACCTGGCCCTTTCACAGCCAAGGCAAGGCAGTGGGCGTGCTGGATATGGTAGTGGGGGTGGGAGGTCAATAGGTCAAGTAGCCGCAGGTGGCTATTCCAGGGATCGAATGGGACGGGGCACAGGTGGTGGCTACCAGAGCGGACGGTATCATGATGGAGGTTATGGGAGGAGTGCTCAAGGGGGTTCTGCATTGAGGGGACCCCAGGGCGATACGTCTTCACGCATGGTTAGCCTTAAGGGTGTTCGAGCTTAA 2823 0.4605 MASRFWTQGGSDSEEEESDYDEEVETAAGESASQAVTSRYLQENASDSDDSDGQKRVVRSAKDKRFEEMASTVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESVKVPNLYIKTLVMLEDFLAQALANKDAKKKMSSSNAKALNTMKQKLKKNNKQYEDLINKCRENPESDEEKEEEESEEEYESDDEIIEPEQLRKPEAKSDSEASQYDDEKQDAGDGPWDQKLSKKDRLLDRQFMKDPSEITWDTVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLNGHMPINVWKKCVQNMLVILDILVQHPNILVDDSVEPDENETQKGADYNGPIRVWGNLVAFLERIDVEFFKSLQCIDPHTRDYVERLRDEPLFLVLAQNVQEYLERVGNFKAASKVALRRVELIYYKPQEVYDAMKKLTELTENGDDAGETSEEPKGFEESRIPTAFIVTPEIVARKPTFPDNSRTIMDILVSLIYKYGDERTKARAMLCDIYHHALLDEFSIARDLLLMSHLQDSIQHMDISTQILFNRAMSQLGLCAFRIGLISDAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLESVHLVSAMLLEVPNMAANVHDAKRKVISKTFRRLLETSEKQTFTGPPENVRDHVMAATRFLVKGDFQKAFDIIVSLDVWKFVRNRDTVLEMLKDKIKEEALRTYLFTFASSYESLSLDQLSKFFDLSVSCTHSIVSRMMINEELHASWDQPTGCVVFQDVEYSRLQALAFQLTEKLSILAESNERATEARIGGGGLDLPLRRRDGQDYAAAAAGGSGTASSGGRWQDLALSQPRQGSGRAGYGSGGGRSIGQVAAGGYSRDRMGRGTGGGYQSGRYHDGGYGRSAQGGSALRGPQGDTSSRMVSLKGVRA 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02206 940 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 871 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vimu6g02206 940 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 43 652 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vimu6g02206 940 SUPERFAMILY "Winged helix" DNA-binding domain 716 791 IPR036390 -
Vimu6g02206 940 MobiDBLite consensus disorder prediction 45 64 - -
Vimu6g02206 940 Coils Coil 144 171 - -
Vimu6g02206 940 MobiDBLite consensus disorder prediction 1 64 - -
Vimu6g02206 940 MobiDBLite consensus disorder prediction 883 940 - -
Vimu6g02206 940 MobiDBLite consensus disorder prediction 30 44 - -
Vimu6g02206 940 MobiDBLite consensus disorder prediction 194 229 - -
Vimu6g02206 940 ProSiteProfiles PCI domain profile. 620 792 IPR000717 -
Vimu6g02206 940 MobiDBLite consensus disorder prediction 175 193 - -
Vimu6g02206 940 MobiDBLite consensus disorder prediction 135 154 - -
Vimu6g02206 940 MobiDBLite consensus disorder prediction 155 174 - -
Vimu6g02206 940 MobiDBLite consensus disorder prediction 12 26 - -
Vimu6g02206 940 Pfam PCI domain 660 788 IPR000717 -
Vimu6g02206 940 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 721 809 IPR000717 -
Vimu6g02206 940 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 935 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vimu6g02206 940 MobiDBLite consensus disorder prediction 133 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02206 Vimu-Chr6 19359204 19362773 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02206 1 940 Eukaryotic Initiation Factors Gene Family AT3G56150 68.750 0.0 1203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02206 6 19359204 19362773 Vimu6g01796 6 16263440 16264455 ECH
Vimu6g02206 6 19359204 19362773 Vimu6g02206 6 19359204 19362773 ECH