Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02200 TTGTTTGTTATTTCACGCGCCCCCCCTCTTCGTTTGGACCTTCTCTTGCTCACTCACTTCAACGGCGCCGGAGATTCGTCGCTCCTATTCTCCACCGCCGCGATGGGCGCCAATTCCATGCTCTCCGAATCCTCTCACGATGTCGACGATCAGATCTCCCAGCTAATGCAGTGCAAGCCACTCTCCGAGCAACAGGTCAGAGTTTTATGTGAGAAGGCCAAGGAGATTTTAATGGATGAAAGTAATGTTCAGCCTGTTAAAAGCCCGGTGACAATTTGTGGTGATATTCATGGGCAGTTTCATGATCTTGCTGAACTGTTTCGAATTGGAGGGAAGTGTCCAGACACTAACTACTTGTTTATGGGTGATTATGTGGACCGCGGTTACTATTCAGTTGAGACTGTAACTCTCCTTGTGGCACTGAAAGTGCGGTATCCTCAACGGATTACTATTCTTAGAGGGAACCATGAAAGCCGTCAGATTACTCAAGTGTATGGATTTTATGATGAATGCCTTCGAAAGTATGGTAATGCTAATGTTTGGAAGACCTTTACAGATCTTTTTGATTTTTTCCCATTGACAGCGTTGGTTGAATCAGAAATATTCTGCTTGCATGGTGGACTTTCACCTTCAATTGAGACCCTTGATAACATACGGAACTTTGATCGTGTTCAAGAAGTTCCTCATGAAGGCCCCATGTGTGATCTATTGTGGTCTGACCCCGATGACAGATGCGGCTGGGGAATTTCTCCTCGAGGTGCTGGATATACTTTTGGCCAGGATATATCAGAACAATTTAATCACACAAACAGCCTCAAGTTGATTGCTAGAGCTCATCAACTGGTTATGGATGGATTTAACTGGGCTCATGAACAAAAGGTGGTTACCATTTTTAGTGCGCCAAACTACTGTTACCGATGTGGGAACATGGCTTCCATATTGGAGGTTGATGACTGCAAGGGACACACATTTATTCAGTTTGAACCTGCGCCTAGGAGAGGAGAACCTGATGTGACTCGTAGAACGCCTGATTATTTCTTATAA 1044 0.4483 MFVISRAPPLRLDLLLLTHFNGAGDSSLLFSTAAMGANSMLSESSHDVDDQISQLMQCKPLSEQQVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKTFTDLFDFFPLTALVESEIFCLHGGLSPSIETLDNIRNFDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHTNSLKLIARAHQLVMDGFNWAHEQKVVTIFSAPNYCYRCGNMASILEVDDCKGHTFIQFEPAPRRGEPDVTRRTPDYFL 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02200 347 FunFam Serine/threonine-protein phosphatase 41 347 - -
Vimu6g02200 347 SMART pp2a_7 61 331 IPR006186 GO:0016787
Vimu6g02200 347 Pfam Calcineurin-like phosphoesterase 89 280 IPR004843 GO:0016787
Vimu6g02200 347 SUPERFAMILY Metallo-dependent phosphatases 44 332 IPR029052 -
Vimu6g02200 347 Gene3D - 40 347 IPR029052 -
Vimu6g02200 347 PRINTS Serine/threonine phosphatase family signature 293 309 IPR006186 GO:0016787
Vimu6g02200 347 PRINTS Serine/threonine phosphatase family signature 118 145 IPR006186 GO:0016787
Vimu6g02200 347 PRINTS Serine/threonine phosphatase family signature 186 212 IPR006186 GO:0016787
Vimu6g02200 347 PRINTS Serine/threonine phosphatase family signature 89 116 IPR006186 GO:0016787
Vimu6g02200 347 PRINTS Serine/threonine phosphatase family signature 271 291 IPR006186 GO:0016787
Vimu6g02200 347 PRINTS Serine/threonine phosphatase family signature 151 175 IPR006186 GO:0016787
Vimu6g02200 347 PRINTS Serine/threonine phosphatase family signature 215 242 IPR006186 GO:0016787
Vimu6g02200 347 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 46 347 IPR047129 GO:0004722
Vimu6g02200 347 ProSitePatterns Serine/threonine specific protein phosphatases signature. 152 157 IPR006186 GO:0016787
Vimu6g02200 347 CDD MPP_PP2A_PP4_PP6 47 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02200 Vimu-Chr6 19312920 19319395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02200 53 277 Calmodulin-binding Proteins AT5G63870 34.457 9.65e-33 122
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02200 6 19312920 19319395 Vimu6g02200 6 19312920 19319395 ECH