Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02194 ATGCCGGCTGGTCACGGTTTGAGATCTCGCACGAGAGATTCATTCTCTCGTCCCTTCAGGAAGAAGGGAACCATCGCCCTCACAACTTATCTCCGAACTTACCACATCGGCGATTACGTTGACATCAAGGTTAACGGCGCCGTCCACAAGGGTATGCCTCACAAGTTCTACCATGGTCGCACCGGTCGTGTTTGGAACGTCACCAAACGCGCCATTGGTGTCGAGGTTAACAAACAGGTATTCACTCTCCCGGAAACCATAACGCCGTTATTGCTTTTCTTCTGGATTTGTCATCTTTTTCAAGGTTTACATCTGTGTTCTCTAATTCGTATTTTGTGCCTTCAGCGCGTTACTGTTGGTCTATTGGTGGGGAACAGAATTATTAGAAAGAGGATTCATGTGCGTGTTGAGCATGTGATGCCCTCAAGGTGCACTGAGGAGTTCCGTTTGAGGAAGATCAAGAATGATCAACTAAAGGCGGATGCTAAGGCAAAGGGGGAGAAAATTAGCACCAAGAGACAACCTGAGGGCCCCAAACCAGGTTTCATGGTGGAAGGAGCTACACTAGAAACTGTCACTCCCATTCCTTATGACGTGGTTAATGATCTTAAAGGAGGATATTAG 624 0.4728 MPAGHGLRSRTRDSFSRPFRKKGTIALTTYLRTYHIGDYVDIKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVFTLPETITPLLLFFWICHLFQGLHLCSLIRILCLQRVTVGLLVGNRIIRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKADAKAKGEKISTKRQPEGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02194 207 FunFam 60S ribosomal protein L21 142 201 - -
Vimu6g02194 207 PANTHER 60S RIBOSOMAL PROTEIN L21 1 80 IPR001147 GO:0003735|GO:0005840|GO:0006412
Vimu6g02194 207 Gene3D Ribosomal protein L21 1 87 IPR036948 GO:0003735|GO:0005840|GO:0006412
Vimu6g02194 207 FunFam 60S ribosomal protein L21 1 87 - -
Vimu6g02194 207 SUPERFAMILY Translation proteins SH3-like domain 3 80 IPR008991 -
Vimu6g02194 207 ProSitePatterns Ribosomal protein L21e signature. 37 62 IPR018259 GO:0003735|GO:0005840|GO:0006412
Vimu6g02194 207 Pfam Ribosomal protein L21e 1 80 IPR001147 GO:0003735|GO:0005840|GO:0006412
Vimu6g02194 207 Gene3D - 142 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02194 Vimu-Chr6 19276632 19277432 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02194 1 207 Cytoplasmic Ribosomal Protein Gene Family AT1G57860 66.667 3.87e-96 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02194 K02889 - gmx:100305629 315.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02194 6 19276632 19277432 Vimu6g02194 6 19276632 19277432 ECH