Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02187 ATGACCGAACCCGAACTCCTTGCAATGTTCCAGGAGTTCGCGCTCGTCGACGAGGTCAACATAATCAAGGACAAAGCAACTCGTGTTTCCCGAGGTTGTTGTTTCGTCATATGTCCTTCCAGGGAGGAGGCTGATAAGGCCGTCAATGCGTGTCACAACAAGAAGACGCTACCCGGGGCATCCAGTCCATTACAAGTGAAGTATGCAGATGGCGAGTTGGAAAGATTAGGTCAACCCTTGATGTGTAATTTTCTGTTGTCATTGGATCTAGAACACAAACTCTTCATTGGCATGCTTCCGAAGAATGTATCCGAAGTCGAAATATCTGCACTTTTCTCCCAGTATGGAACCATAAAGGATTTACAGGTTTTAAGAGGTTCTCAGCAAACAAGTAAAGGTTGTGCATTTTTGAAGTATGAAACCAAAGACCAGGCGCTTGCTGCTTTGGAGGCAATCAATGGAAAACATAAAATGGAGTATTTTGGACCTTCAAGCGGCATTCAGCCACAAAATTCTGTTGGTGAGGGACGTGAACATTTAATCATGCTAAAGCTTGACTCATTATTTATACGGCAGGCTCAAACTGGATCCAAGCTTAGAAAGGGGAACTCCAGCTATGTGCCAAAGTCACATGCTTCTGTTTGCTTGATATGCACAGTACTCATACGTGGTTCAAGTGTTCCCTTAGTTGTTAAATGGGCTGATACTGAAAAGGAAAGGCAAGCTCGAAGAGCTCAGAAAGCACAGTCTCAAGCTTCTAATGTACCACACAGTGATTCTCAGCACCCGTCATTGTTTGGAGCCTTGCCAATGGGTTATGTTCCTCCATATAATGGATATGGTTATCAGGCTCCTGGAGGTTATGGGCTCATGCCCTACCGCATGCCACCAATGCAGAGTCAACACGGTTTCCATAATATGATGCCCCATATGAATCATCAAGGAAATGCATTACGGCCTGATCTTGGCCCTAATATGAACCCTAGAAATTATCATGTGGCTCCTGCAAGTTATGTTGGTTCTTATCCTGCTGTAACAGGTCTACAACATCCCATGGCATATCCTACAGGAATGATTAGTCCAAGGCCCATGAATGCTTCTCCCGGCTCTGTTTCACCTGCTAGTGGAAACAACAACACTGCTGCATCTTCTGGTGGCAGCAAAAATTCTGGGGGGCAGGTTGAAGGACCACCTGGTGCCAACCTATTTATTTATCACATACCTCAAGAATTTGGAGATGAAGAACTTGCCAACGCTTTTCAGCCATTCGGTATGGTCTTGAGTGCTAAAGTTTTTGTTGATAAAGCAACTGGTGTTAGCAAATGTTTTGGGTTTGTAAGTTATGATTCTCCAGAGGATGCTCAATCTGCCATCGGTATGATGAATGGATTCCAATTAGGAGTGTCTAGGAGATTCCCTTCTGCAGTGTTGTTGGGTGCAGCACTTATACATTGCTTCTTGTTCATGATATACATGGAGAACCCTTCTGGTTTCCCTTCTAATTACATGCTTCTTGAGGCCAGTGGTGACTCTGAAACTGACTGCAACCCCACTATGGAAGAAGAACATGGTTGTGAAATTGCCAGAGAAGATGATGATGCTCAATCTTGCATCCACGATACTTCTGAGACATCTAATGCTGCTGAGCTCAAAGGGTATGAATTTTGGAATAATGATCATGATGCAGATGATGTTGATGATGATGAGAAGAAATGTGAGGTTCATGGAACATCATATTGTGATGATGATGATGATCAGATGCAAGAACAACAGAAGTTCTGTGTGTCTGATGAGTCAGGCCATGAAGTGTTGGATGAGATGGAAAAGAACAGGAGGTTCTGGGAAGCTTGCTTGGCATCGTGA 1863 0.4396 MTEPELLAMFQEFALVDEVNIIKDKATRVSRGCCFVICPSREEADKAVNACHNKKTLPGASSPLQVKYADGELERLGQPLMCNFLLSLDLEHKLFIGMLPKNVSEVEISALFSQYGTIKDLQVLRGSQQTSKGCAFLKYETKDQALAALEAINGKHKMEYFGPSSGIQPQNSVGEGREHLIMLKLDSLFIRQAQTGSKLRKGNSSYVPKSHASVCLICTVLIRGSSVPLVVKWADTEKERQARRAQKAQSQASNVPHSDSQHPSLFGALPMGYVPPYNGYGYQAPGGYGLMPYRMPPMQSQHGFHNMMPHMNHQGNALRPDLGPNMNPRNYHVAPASYVGSYPAVTGLQHPMAYPTGMISPRPMNASPGSVSPASGNNNTAASSGGSKNSGGQVEGPPGANLFIYHIPQEFGDEELANAFQPFGMVLSAKVFVDKATGVSKCFGFVSYDSPEDAQSAIGMMNGFQLGVSRRFPSAVLLGAALIHCFLFMIYMENPSGFPSNYMLLEASGDSETDCNPTMEEEHGCEIAREDDDAQSCIHDTSETSNAAELKGYEFWNNDHDADDVDDDEKKCEVHGTSYCDDDDDQMQEQQKFCVSDESGHEVLDEMEKNRRFWEACLAS 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02187 620 Gene3D - 1 75 IPR012677 -
Vimu6g02187 620 SUPERFAMILY RNA-binding domain, RBD 1 76 IPR035979 GO:0003676
Vimu6g02187 620 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 71 IPR000504 GO:0003723
Vimu6g02187 620 MobiDBLite consensus disorder prediction 363 391 - -
Vimu6g02187 620 SUPERFAMILY RNA-binding domain, RBD 92 467 IPR035979 GO:0003676
Vimu6g02187 620 FunFam RNA-binding protein BRN1 367 472 - -
Vimu6g02187 620 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 155 IPR000504 GO:0003723
Vimu6g02187 620 MobiDBLite consensus disorder prediction 246 261 - -
Vimu6g02187 620 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 402 467 IPR000504 GO:0003723
Vimu6g02187 620 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 155 IPR000504 GO:0003723
Vimu6g02187 620 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1 56 IPR000504 GO:0003723
Vimu6g02187 620 Gene3D - 366 470 IPR012677 -
Vimu6g02187 620 MobiDBLite consensus disorder prediction 359 394 - -
Vimu6g02187 620 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 400 472 IPR000504 GO:0003723
Vimu6g02187 620 PANTHER RNA BINDING PROTEIN 420 466 - -
Vimu6g02187 620 SMART rrm1_1 93 161 IPR000504 GO:0003723
Vimu6g02187 620 SMART rrm1_1 401 475 IPR000504 GO:0003723
Vimu6g02187 620 SMART rrm1_1 1 67 IPR000504 GO:0003723
Vimu6g02187 620 Gene3D - 89 245 IPR012677 -
Vimu6g02187 620 MobiDBLite consensus disorder prediction 241 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02187 Vimu-Chr6 19231158 19241916 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02187 401 472 Eukaryotic Initiation Factors Gene Family AT1G22760 37.500 3.78e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02187 K13207 - mof:131156319 491.886