Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02183 ATGGAAGCCGCCGCACCCAGAGATGGACTTCCCCATAACCGAGGTGGCACAGATGATTTGTACACAGAACTGTGGCGTGCATGTGCAGGGTCTTCCGTTTATGTTCCTCGTGTTGGAGAGAGGGTTTTCTACTTCCCACAAGGTCACTTGGAGCAGGTTGCTGCATTTACTCAGCATCAGCAAGATGGACACATGGAAATTCCTGTGTATGATTTGCCTCCTAAGATCTTATGCAGAGTTGTGTGTGTTCTATTACAGGCCGAAACTTACACCGATGAGGTTTTTGCTCAAGTTACCTTAGTTCCGGAGCCCAGGCAAGATCACTTTGGTTTAGAGAACGAAGACAATCATGTTCCTAGCAGAACTACAACCTACTCCTTTGGTAAGGTACTCACTCCGTCAGACACAAGTACACATGGTGGATTCTCTATTCCGAAGAGACATGCTGATGAATGCTTCCGTCCCCTGGACATGACTCATCAAACGCCTGCACAGGAAATTGTTGCGAAGGACTTGCACGGGTTTGAGTGGCATTTTCGACACATATACCGTGGTCAGCCGAAACGACACTTGCTAACTAGCGGTTGGAGCACGTTCGTGAATGCAAAGAAACTTGTTGCTGGAGATTCATGCATTTTTGTTAGGTACTTTCTGTCTCCATGTCTCCTTTCCCTCCTGCCCATGAATTATGTTTGTGCTGTCCCAGAGGAACTCTGTGGGGAGTATGGACAAGTTCGTGTTGGGATTCGTCGGGCAATTCGACATCACAGCAATGCATCCCCTTCTTCATCTCTGATATCGGGTCATAGCATGCAACTTGGAATTTTGGCAAGTGCTTCCCATGCTGTCGCCACAGGATCCATGTTCACTGTCTATTACCACCCTTGGACGAATCCTTTTGAGTTTATCATTCCTCTGCAAAACTATTTGAAGTCAATTGTACCCGACTATTCAATTGGAACGAGAGTTCAGATGCAGTGTGATGTTGAAGAGTCTCGAAGAAGATATGCAGGTACGATAATTGGTAATGAAGTTATTGACAGCATTAGGTGGCCTGGTTCTGAATGGAGATGTCTCAAGGTGCAATGGGATACCATAGTAGATGCCTTCATGCACCCTGAAAGGGTCTGTCCGTGGTGGATTGAGCCCTTGGAATCTGGCATGGAGAACCACATTCCCGTTCTCCCCAACCCAAAAAAGGCACATGTACTTCACCAGCGCCCTTTGCCTGGATTAAATGTCTTTGCCATGGATGATGCTGCCGCTCAGAGTTCAGCCAGGCGGGTAGCGGATAGGGACTTGCAAGGACAAGATTACAGTGGCCTGAGTACTTCACGGGCATTGCAAAGACCACCATCGACCGATGTAATCCACCCATCGAAGTTCTCAATCGGTGGCTCACAATTCGGGAAGGAGAATCTGAACCAGCTTCCCTTTCTGATGCAAGACATTCTTCATAAATCTCTTGGAAGATCAAGGTCATTGCCACATGAAGACTTGTCAATTTCAAGTTCAAATTTAAGCTCCATTTGTTCTGAATCCTTGGGATGGCCGCCTTCTGAATCTAGAAATGAAAATGATGCTCCACTTGGCCATCTTGGCAGTTGTAGCAAATACAAGCTTTTTGGAGTTAACTTAATTGACCGTCAACCGGAGCTCCCTTCACCACAATTTGATGGTTTCAGCAAGACTTCAAGTCTGCTTTCTATTCCTCCAATGTTTGTTACCTCCGGGAAAACATGTAAGAAGTGCCGCTCTGTCAATAATCGTAGCTGCACAAAGGTGCTTAAGCTGGGAACTGCTCTTGGAAGAGCAGTTGATCTTACCCGTTTTCGTGGATATGATGAACTCATTGCTGAGCTCGACTCGATGTTTGATTTTGGAGGCAGCTTAGTCAATGGAAGCAGTGGATGGCATGTGACCTGCATAGATGATGATGGAGACATGATGTTCTTGCGAGATTACCCATGGCAGTTAATGTATGGTGCAAAAGATGATCATATGTCAGAAGGATGGTATCAACAATCTCAATCCAAGCTCCTCAACAGATCCTCCAAGCCTTTAGTGATCCGCCTTGCATCTCTTTCTCCACCAGCTTGCAGGACTAGTCCATCTATCTATATCTGTTCTCTCTATGCAACCAATGCCATTCTGAGTCGTTTTTAG 2166 0.4617 MEAAAPRDGLPHNRGGTDDLYTELWRACAGSSVYVPRVGERVFYFPQGHLEQVAAFTQHQQDGHMEIPVYDLPPKILCRVVCVLLQAETYTDEVFAQVTLVPEPRQDHFGLENEDNHVPSRTTTYSFGKVLTPSDTSTHGGFSIPKRHADECFRPLDMTHQTPAQEIVAKDLHGFEWHFRHIYRGQPKRHLLTSGWSTFVNAKKLVAGDSCIFVRYFLSPCLLSLLPMNYVCAVPEELCGEYGQVRVGIRRAIRHHSNASPSSSLISGHSMQLGILASASHAVATGSMFTVYYHPWTNPFEFIIPLQNYLKSIVPDYSIGTRVQMQCDVEESRRRYAGTIIGNEVIDSIRWPGSEWRCLKVQWDTIVDAFMHPERVCPWWIEPLESGMENHIPVLPNPKKAHVLHQRPLPGLNVFAMDDAAAQSSARRVADRDLQGQDYSGLSTSRALQRPPSTDVIHPSKFSIGGSQFGKENLNQLPFLMQDILHKSLGRSRSLPHEDLSISSSNLSSICSESLGWPPSESRNENDAPLGHLGSCSKYKLFGVNLIDRQPELPSPQFDGFSKTSSLLSIPPMFVTSGKTCKKCRSVNNRSCTKVLKLGTALGRAVDLTRFRGYDELIAELDSMFDFGGSLVNGSSGWHVTCIDDDGDMMFLRDYPWQLMYGAKDDHMSEGWYQQSQSKLLNRSSKPLVIRLASLSPPACRTSPSIYICSLYATNAILSRF 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02183 721 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Vimu6g02183 721 Gene3D - 125 253 IPR015300 -
Vimu6g02183 721 SMART B3_2 127 229 IPR003340 GO:0003677
Vimu6g02183 721 MobiDBLite consensus disorder prediction 426 459 - -
Vimu6g02183 721 SUPERFAMILY CAD & PB1 domains 593 661 - -
Vimu6g02183 721 CDD B3_DNA 126 213 IPR003340 GO:0003677
Vimu6g02183 721 Pfam B3 DNA binding domain 127 214 IPR003340 GO:0003677
Vimu6g02183 721 SUPERFAMILY DNA-binding pseudobarrel domain 118 227 IPR015300 -
Vimu6g02183 721 ProSiteProfiles PB1 domain profile. 590 679 IPR000270 GO:0005515
Vimu6g02183 721 FunFam Auxin response factor 316 387 - -
Vimu6g02183 721 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 659 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vimu6g02183 721 MobiDBLite consensus disorder prediction 437 451 - -
Vimu6g02183 721 Gene3D - 316 389 - -
Vimu6g02183 721 FunFam Auxin response factor 125 221 - -
Vimu6g02183 721 Pfam Auxin response factor 279 360 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vimu6g02183 721 Gene3D - 586 665 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02183 Vimu-Chr6 19204194 19211509 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02183 583 658 B3 DNA Binding Superfamily AT5G62000 47.368 5.10e-18 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vimu6g02183 B3 1.1e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02183 - - gmx:100802387 936.021
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02183 6 19204194 19211509 Vimu6g02183 6 19204194 19211509 ECH