Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02173 ATGACCGCTGAAGCGCCGAAACCAGCGCGACCCTGTGACTACTGTGGTCACTCCATGGCGGTTCTCTACTGCAGAGCCGATTCGGCCAAGCTCTGTTTCTCGTGCGACCGCGAGGTTCACTCTACCAACCAGCTCTTCTCGAAGCACACGCGCACGCTGCTCTGCGACGCATGCGATCATTCCCCTGCTACCATACTCTGTTCCACCGACACCTCTGTTCTCTGCCAGAACTGCGACTGGGAGAAGCACAACCCGTCGCTCTCCGATTCCCTTCACCAACGGAGGCCCCTCGAAGGCTTCACCGGTTGCCCTTCGGTCTCCGAACTTTTATCCGTTGTGGGGTTTGGAGATCTCAGCAAAAAATCGCTGCTTTCTTCGCCTCAGGGAAGTGCCGCTGATGGGTTCCTCGGGTGTGAGATTGAAGGGTTTTCGGATTTGTTTGTTTGGGATGCGCCTTCTGTCGTTACGCTTGATGATTTGATTTGTTCTTCCGCTTCTTCTCATAGCTTTCAGGCCATGGAAGTTCCTCCGCTGCCTAAGTTGTGCTTGTCTTATGGGAGAGTGGATGATTCGGATGTCAAAGTAGACATTGAAAAGCTGTGTCTATTGCTACAATTTTTGACTTGTTCAGGAGAAGAGATTCTTAGTCAGCTTCGGGAATTGGCCAAGTCTGAGCCATTGGATCTTGAACAATATGTGCAACCAGGAAACCTGTCCTCGGCTTTTGAAAGTGACGTGGAGCATTCTTCTAATTTTGAATTCCGATTTGCTGTTGTGATAAATCTTGCAAAACCAATAGCCAGCAACATATATCTTGCTTTCTTATTTCCTGTGCCTGGCCTTGGTCTCTTGTCTTATGGGCAAGCTAGGTCGTTAGGTTACTCTTTTGTACCATTCAAAGATGCCTTCTTCATTGTGCATGGTTGGCATAGAGAAAGGAGTGAGCCTATGTATCAAGTTGTTCCTCCTGACCCATCATTGAGAACTTATACTGAAGAAGTTCCAGTTAAACAATCCACTTCTGTCGGGGAAACTCACACCTTTGGCGACAAGGGAGGGAATCCATCTATTTCTCTTAACTCTGAAACCCTACCAACTACTCCCAAAGCCGGTGCATGTGAGTTAACTAGCCAAGAAAGAGATTCTGCATTGTTACGGTATAAACAGAAGAAGAAAACAAGAAGAGATATCAAGAACGAGTCATTATTATCTGACCGTTTCCACCAATACGTTGATTTATTGACTGAAAGAGTTCAGCTGAGACTTTTCTGGAATAGTGCTCATATTATTTGTTTTGTTATCGTCATTTACAGTGAAGTGTACTGTGCTTCTGTAATTAACTAG 1344 0.4635 MTAEAPKPARPCDYCGHSMAVLYCRADSAKLCFSCDREVHSTNQLFSKHTRTLLCDACDHSPATILCSTDTSVLCQNCDWEKHNPSLSDSLHQRRPLEGFTGCPSVSELLSVVGFGDLSKKSLLSSPQGSAADGFLGCEIEGFSDLFVWDAPSVVTLDDLICSSASSHSFQAMEVPPLPKLCLSYGRVDDSDVKVDIEKLCLLLQFLTCSGEEILSQLRELAKSEPLDLEQYVQPGNLSSAFESDVEHSSNFEFRFAVVINLAKPIASNIYLAFLFPVPGLGLLSYGQARSLGYSFVPFKDAFFIVHGWHRERSEPMYQVVPPDPSLRTYTEEVPVKQSTSVGETHTFGDKGGNPSISLNSETLPTTPKAGACELTSQERDSALLRYKQKKKTRRDIKNESLLSDRFHQYVDLLTERVQLRLFWNSAHIICFVIVIYSEVYCASVIN 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02173 447 ProSiteProfiles Zinc finger B-box type profile. 50 97 IPR000315 GO:0008270
Vimu6g02173 447 SMART bboxneu5 7 54 IPR000315 GO:0008270
Vimu6g02173 447 SMART bboxneu5 55 97 IPR000315 GO:0008270
Vimu6g02173 447 CDD Bbox1_BBX-like 11 54 - -
Vimu6g02173 447 ProSiteProfiles Zinc finger B-box type profile. 7 54 IPR000315 GO:0008270
Vimu6g02173 447 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 11 399 - -
Vimu6g02173 447 Pfam B-box zinc finger 54 96 IPR000315 GO:0008270
Vimu6g02173 447 Pfam B-box zinc finger 9 52 IPR000315 GO:0008270
Vimu6g02173 447 CDD Bbox1_BBX-like 54 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02173 Vimu-Chr6 19114727 19117593 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02173 4 243 C2C2-CO-like Transcription Factor Family AT2G47890 41.975 3.15e-56 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Vimu6g02173 zf-B_box 5.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02173 - - gmx:100817838 492.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02173 6 19114727 19117593 Vimu6g02173 6 19114727 19117593 ECH
Vimu6g02173 6 19114727 19117593 Vimu3g01730 3 31470678 31472447 PCT