Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02159 ATGGATGCGTGGAACGAAGATTTTGCGGAGCAGGAGATTGGGAACTCCGCGGAATCGTTCCAAAAGTTTTTGCTTTCGCAGAGAGATCTCTTCCACAGCCAGATCGATCAGTTTCAGGAAATCGTCGTCACGCAATGCAAACTCACCGGCGTCAACCCTCTCTCTCAAGAAATGGCAGCTGGTGCTTTGTCAATAAAAATTGGAAAAAGACCTAGGGATTTATTGAATCCAAAAGCAGTAAATTACATGCAATCAATTTTTTCGATTAAAGATTCTATTAGCAAAAAGGAGTTGCGCGAGATCAGTGCTTTATTTGGTGTCACAGCGACGCAGGTGCGTGACTTTTTCACTGGGCAGCGCTCAAGAGTGAGGAGACTAGTGCAGCTTTCAAAAGAGAGGTCACTAGGTTCCAATTCTTGTGAAGATCCTCACGATGATAAAATAATTCCTGATCCTGTTAGACTAAGTAATCTAGCTTCCGTAAACTCTACCGTCCCATCCAATGCTGAAGAAGCGTCTTGTTCAACACACGATGCAGCCTTGCCTGACCTAGATGATTCAGATAAACATTTTGTTGATAATATTTTTAGTTTAATGCAACAAGAAGAGACATTTTCCGGGCAAGAGAAATTGATGGAGTGGATATTGACGATACAGAATTTTTCAGTATTGTTGTGGTTTTTGAGCAGAGGGGGTGGAATAACTTTAGCTACTTGGTTGAGTAAGGCAACTGCTGAGGAGCAAACCAGTGTCCTTCTTCTTATCTTGAAGGTTCTTTGTCATCTGCCTTTACATAAAGCCATTCCCATGCACATATCAGCTATATTGCAGAGTGTAAATAAACTTCGGTTCTACAGGACATCAGACATATCAAACAGGGCTAGGATTTTGTTATCAAAGTGGAGCAAATTATTAGCAAGGAACCAAGTAATAAAGAAGCCCAATGGTGTTAGGCCTTCTAGTGATGGGCATAAAGATTTCGGTCAATTTGCAGGCTCTGAATCATGGCATTCCAATATTGATGTTCCTGAAGACTTTCTTTCACTTTCAAGCGAATCTCTGGACAATTTCAGGAAAGTGGGATCTCCACAAGCTGCGAAATTGTTGCCTCCTAGCTTGGATGATTCTAATAAAAAGTCTACATTTGGTGTTTCTTCATCTCGTATCCTTGTGTTTGTAACAAGCTTACTAACTGAATCTAGAGAGCGCAGAAAAGTGCAATTGGTGGAACAGCCAGGCCAAAAGTCAGTTAGCAGAAGTTCACAGGTGACAAGAGCAGGGTCTGTAAGTCAAGGTCGGCCCATGTCTGCGGATGATATCCAGAAAGCAAAAATGCGTGCTTTATTTATGCAGAATAAGTATGGGAAATCCGGTTCAAAAGAAAGTAAAGAAACAAAGATTGATAGTCTGAATAAACAACCTCAGACAATTCCTGCCAGTATTGCAGCTTGCTCTTCTAAAGTTCCTACTCCTCCCAAAATTGACGAAAACAAGAAACCTTTGTTACTTGCCTCTAAAACCAGCAATAGGCTGGAGGCTTATTCAAAACCGAAAGTGGATGTGAAGGAACCTCTCTGGGAGAAGTGCATGAGGATTCAGATACCATGGAAAACACCAGCAGAAGTGGAACTTAAAGATAGCTGGAGCGTTGGTGGCGGGGAAAACAGCAAAGAGGTTGAAGTCCAGAGAAACAGAGACCGCAGGGAAAAGGAAACTATATATAAAACTATCCAAGAAATCCCACCTAACCCCAAGGAGCCTTGGGACATTGAAATGGACTATGATGACACTTTGACGTTGGAAATTCCTATTGAACAGTTACCAGATGGTGACGGTGCAGACATAACAGTTTCCCCCAATCAGGTTGCAGCTCATACTGTTGAAGGGGTGGCCTCCACTTCTTCGACAAGTGTGGCTCCTGCTGAGCCTGATTTAGAATTGCTTGCCGTACTGCTGAAAAATCCAGAGTTGGTATTTGCCTTAACTTCTGGACAAGCGGGTAGCATACCGGGTGAAGACGTAGTGAAGCTGCTTGACATGATCAAGAGAGGAGGTGCCAACTTGGGTTTAAGTGAAAATACAAATGGGAGCTATGGCACGAGTGTAAAAGCCCCCGATAAGGTGGAAGTTTCGCTCCCATCTCCAACCCCTTTAAGCGATCCAAGAACGGTGCGTGATTTGAGTTCATACTACCACTATTTGTCAAAGATCTTATCATCATTCCTGATGTCTCCTATTACAGTGCCATGCACACCCCACTTTAGCCATAATGGATGGAGATCAGAAGCATCAAAAAACCCCTTTTCACGGCGAAGTGTAGCATCTGATAGAATTATCCAGAACCATGCTGCAGTGACAACTACCAACTTACTAACTCAGATTCCCATGACTAGCACTACTGCACTAAGGCAACAGCCAGCAGTTGTGGTTTCATCTTCGAGGCATCTCTCAAGCACAACAGTTTCTCCATATTCACTGCATCAGGCAACTAATGTTAATCCTGAAAAACAACAACCACTGGGGCATGTACAAATACCATCCTCAAATGTAGGTTTAACCATGAAGAAGAACTTAATCACTACCAATGCACCTTCAGTTAACTATTCTGGCACTCATTCAGCTGTAGCAATGCGGGGTAATGGCACCAATTATGTAAAACCCGTACATAGTCTGAGTGTACAACACGAGGGTGTGTCTAATTCCTTCCCACAGTCATCCTTTAAGCTACCCTCACCAACGCCGTCAAATTCAGCCTCACAGCAGCAAAGACATCAACAACATATAGTCCAGGAAGCCCATTACACCGAACCTCCTTATCGTAACCCTAGCCGTTCCTACCCATCACAAACCGAAAAATCAGACCATGGGTCTGAAAGCGCGTGGAGAATTAGGCAAGATGTTCCATTCAGTTCTCAAAGAATTCCTAACAATTATAATACAGTGGTTGGGGGATCCAGGCAATCTGGTTTTTGGGATAGAAATAATCAAGGAGGGGAAGATTTTGAGTCATGGAGTCCTGAAAATAGTCCAACTAGAAATCCTAGGTATATACCAGGTAGAAACTACCCAGATTCCAGAGTGAATCATGGGAGAAATCATAGACCTGAATGGTCAAGACAGAGAGGTTCTTCTGAACACTGGGACCCTGACAGGCAGGGAAATAGAAAGTGGCATGAACAGAGGCGATAA 3189 0.4318 MDAWNEDFAEQEIGNSAESFQKFLLSQRDLFHSQIDQFQEIVVTQCKLTGVNPLSQEMAAGALSIKIGKRPRDLLNPKAVNYMQSIFSIKDSISKKELREISALFGVTATQVRDFFTGQRSRVRRLVQLSKERSLGSNSCEDPHDDKIIPDPVRLSNLASVNSTVPSNAEEASCSTHDAALPDLDDSDKHFVDNIFSLMQQEETFSGQEKLMEWILTIQNFSVLLWFLSRGGGITLATWLSKATAEEQTSVLLLILKVLCHLPLHKAIPMHISAILQSVNKLRFYRTSDISNRARILLSKWSKLLARNQVIKKPNGVRPSSDGHKDFGQFAGSESWHSNIDVPEDFLSLSSESLDNFRKVGSPQAAKLLPPSLDDSNKKSTFGVSSSRILVFVTSLLTESRERRKVQLVEQPGQKSVSRSSQVTRAGSVSQGRPMSADDIQKAKMRALFMQNKYGKSGSKESKETKIDSLNKQPQTIPASIAACSSKVPTPPKIDENKKPLLLASKTSNRLEAYSKPKVDVKEPLWEKCMRIQIPWKTPAEVELKDSWSVGGGENSKEVEVQRNRDRREKETIYKTIQEIPPNPKEPWDIEMDYDDTLTLEIPIEQLPDGDGADITVSPNQVAAHTVEGVASTSSTSVAPAEPDLELLAVLLKNPELVFALTSGQAGSIPGEDVVKLLDMIKRGGANLGLSENTNGSYGTSVKAPDKVEVSLPSPTPLSDPRTVRDLSSYYHYLSKILSSFLMSPITVPCTPHFSHNGWRSEASKNPFSRRSVASDRIIQNHAAVTTTNLLTQIPMTSTTALRQQPAVVVSSSRHLSSTTVSPYSLHQATNVNPEKQQPLGHVQIPSSNVGLTMKKNLITTNAPSVNYSGTHSAVAMRGNGTNYVKPVHSLSVQHEGVSNSFPQSSFKLPSPTPSNSASQQQRHQQHIVQEAHYTEPPYRNPSRSYPSQTEKSDHGSESAWRIRQDVPFSSQRIPNNYNTVVGGSRQSGFWDRNNQGGEDFESWSPENSPTRNPRYIPGRNYPDSRVNHGRNHRPEWSRQRGSSEHWDPDRQGNRKWHEQRR 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02159 1062 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 234 317 IPR035441 -
Vimu6g02159 1062 MobiDBLite consensus disorder prediction 1026 1062 - -
Vimu6g02159 1062 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 106 1043 - -
Vimu6g02159 1062 MobiDBLite consensus disorder prediction 895 1062 - -
Vimu6g02159 1062 Gene3D - 66 127 - -
Vimu6g02159 1062 SMART HOX_1 68 130 IPR001356 GO:0003677
Vimu6g02159 1062 MobiDBLite consensus disorder prediction 895 928 - -
Vimu6g02159 1062 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 230 309 IPR035441 -
Vimu6g02159 1062 ProSiteProfiles 'Homeobox' domain profile. 66 126 IPR001356 GO:0003677
Vimu6g02159 1062 MobiDBLite consensus disorder prediction 407 437 - -
Vimu6g02159 1062 MobiDBLite consensus disorder prediction 964 1015 - -
Vimu6g02159 1062 SUPERFAMILY Homeodomain-like 69 130 IPR009057 -
Vimu6g02159 1062 MobiDBLite consensus disorder prediction 411 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02159 Vimu-Chr6 19010558 19018562 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02159 470 772 Homeobox Transcription Factor Family AT4G02560 39.344 5.53e-43 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02159 - - gmx:100806633 1587.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02159 6 19010558 19018562 Vimu6g02159 6 19010558 19018562 ECH