Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02157 ATGTCAAATATTTCAGCTGATGAAGGAAGCTTCTCCTCAGGAAACAATGGGGAAGAAGTTCATCAAGAAAACCAACACCAACACCCACAAAACCACCTTCATGACTCTACTTCAGGACTATCTGCTGCTTCCAATACCAATGCTTCCACTAATCAACAAACCAAGAAGAAAAGAAACCTTCCAGGAACCCCAGGCAAATACTCAACTACCTCAACTTCTTCTTTTTTTTTTACTGATTATAACCTTGTATTTTTACTTCTGGCTATGGCTATCAAATCTTTCTCGGTTATTAGAAGTATCATGGTATCATATTATTTGCTAATGGATATGTTTTATGAAATAGACCCCAGTGCTGAAGTTGTTGCTTTATCACCAACCACACTGATGGCAACAAATAGATTCGTGTGTGAGATCTGCAACAAAGGGTTTCAGAGGGACCAAAATCTTCAGTTGCACCGCAGAGGTCACAATCTTCCGTGGAAACTGAGGCAACGAACAAGCAATGAAGTTAAGAAACGTGTGTATGTTTGCCCTGAGCCATCATGCGTGCACCATAACCCAGGTCGTGCATTAGGAGACCTCACTGGCATCAAAAAGCACTATAGCCGCAAACACGGTGAGAAGAAATGGAAATGTGACAAGTGCTCTAAAAGATACGCAGTGCAATCTGATTGGAAGGCCCACCAGAAAACTTGTGGCACCAGGGAATACAAATGTGACTGTGGAACCATATTTTCCAGGAGAGATAGTTTTATCACTCACAGAGCTTTCTGTGATGCATTAACTGAAGAAAACAACAGAGTGAACCAGGGTCTGACAAGTGGCATGCCACCAAACCTGCAGAGTCAAATACCGGATCTTATGTCTACCATGCCTCTAAACACTAGTCCCAACACAGCATATGACCCTAAGAACCCACTGAAATCACTCCCCCAAGAACTTGTCCCAATACCATTCAAGTCTATGAGCATGGGAGGGGGCATGTTCTCTACCAATGCAGGTGCACTTTTTGGTGGCCCAAAAAGCATGTCTCCTTCTTCTTCCAGCCTCCAACTGGGTTCCAACACCTCATCAAGCTTCAATTACTTACAAGACAACAAAAACGGAGGACTAATTGCTGCCTCGGCTCAGATGTCTGCAACAGCTTTGTTACAGAAAGCAGCCCAAATGGGTGCCACTGCAAGCAATACCATTAACTCCCCCATGATGCAAAAAGGCTTTGTTAGTAGCACTGCTGCTCCTGATCATGTTTCTTCCACTAGGCCACCATATTCTGGGGCCATGCTGCAGCATAACAACTCCTACGACCATTTCTCTCCACAGCCTGATCTGTCCAACATGGCTGGGGTGAGTGGTGGAGGAGCATTCATCAATCAGTTGTTCCATAAAGGACAAGAAATTTCACAAGTTTTTGACACCAACACTGCCGGGTCTGCTATGAACGATGTGGGAATGTTCAGCCAAATGCCCCTGGGGAGTGACCACAATCCGGGATTGATGAAGAATGTTGAACAAGAAGTTAGTAATTGTTCTGGTTTGATCCATGGAAAAGACGTGGTTGAAGGTAACTCAATGCAGCCATCAAGGTTTGGAGGGAGTGACATGACAACTGTTCATGACTTTTTGGGCATTGGTGGTTCAACTTCTAGAGTCATGAACCATTTTCATCACCATTTTCCACACGAGGATTCAGCAGCTATGGAGGAACCCATATGGGATGTTTGA 1725 0.4423 MSNISADEGSFSSGNNGEEVHQENQHQHPQNHLHDSTSGLSAASNTNASTNQQTKKKRNLPGTPGKYSTTSTSSFFFTDYNLVFLLLAMAIKSFSVIRSIMVSYYLLMDMFYEIDPSAEVVALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSNEVKKRVYVCPEPSCVHHNPGRALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNRVNQGLTSGMPPNLQSQIPDLMSTMPLNTSPNTAYDPKNPLKSLPQELVPIPFKSMSMGGGMFSTNAGALFGGPKSMSPSSSSLQLGSNTSSSFNYLQDNKNGGLIAASAQMSATALLQKAAQMGATASNTINSPMMQKGFVSSTAAPDHVSSTRPPYSGAMLQHNNSYDHFSPQPDLSNMAGVSGGGAFINQLFHKGQEISQVFDTNTAGSAMNDVGMFSQMPLGSDHNPGLMKNVEQEVSNCSGLIHGKDVVEGNSMQPSRFGGSDMTTVHDFLGIGGSTSRVMNHFHHHFPHEDSAAMEEPIWDV 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02157 574 MobiDBLite consensus disorder prediction 1 20 - -
Vimu6g02157 574 MobiDBLite consensus disorder prediction 31 66 - -
Vimu6g02157 574 FunFam protein indeterminate-domain 12-like 113 181 - -
Vimu6g02157 574 SMART c2h2final6 210 230 IPR013087 -
Vimu6g02157 574 SMART c2h2final6 175 205 IPR013087 -
Vimu6g02157 574 SMART c2h2final6 134 156 IPR013087 -
Vimu6g02157 574 Gene3D Classic Zinc Finger 186 268 - -
Vimu6g02157 574 MobiDBLite consensus disorder prediction 1 66 - -
Vimu6g02157 574 FunFam protein indeterminate-domain 5, chloroplastic-like 188 267 - -
Vimu6g02157 574 ProSiteProfiles Zinc finger C2H2 type domain profile. 134 156 IPR013087 -
Vimu6g02157 574 Pfam Zinc finger, C2H2 type 134 156 IPR013087 -
Vimu6g02157 574 SUPERFAMILY beta-beta-alpha zinc fingers 133 231 IPR036236 -
Vimu6g02157 574 ProSitePatterns Zinc finger C2H2 type domain signature. 136 156 IPR013087 -
Vimu6g02157 574 Gene3D Classic Zinc Finger 115 179 - -
Vimu6g02157 574 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 30 550 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02157 Vimu-Chr6 19004795 19007121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02157 115 412 IDZ Gene Family AT3G50700 54.434 4.25e-107 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu6g02157 zf-C2H2 0.0059 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02157 - - gmx:100779705 897.501
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02157 6 19004795 19007121 Vimu6g02157 6 19004795 19007121 ECH