Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02132 ATGGTCCTCAAGCTTCACTTTCAGAAGTCTGAGGTCTATTTCACAAAGACACTGAGTGGACACAGTCGGTGGTTTTCTTCCCAAGGGACAGAAACAAGCATGTTCTTGTCATCTCCAGCATGGATAAAATCCTTCTCCTGTACATTTCCCGTGAAGCAAACCTCAGGGGACATGTTTATCTCAACTATGCTTCAATGGCTGAGATTTTTCTTCCTCTCACCGTGTCCTCAAAGAACTATATTATCTTTCGTCGATGTCGTGTTTCTCTTGTTTCTCTTCGTGTTTACTATCACCAAGCTCTGGAAAAGGCTCACCTCCCATGGCGGTTTCGGCACTCACCTCAATGAACCACTCGTCAGAAACAGCAGATCCATTTTCTTAACTATTCGGTTCAAGCTAACCTTAACCGCAGAGGTTGCTTTGACTATACTTTACACGGTTGCTACCGTTCTTGCGTTTAGCAGTTCCTCCAAGGTGCCGTGGAAGCAAGTTGACGACTTGTTTTGGATAGTCCACGCCATAACACATGCGGTGCTTGCATTCGTGATCATCCACGAGAAAATATTTGAAGCTGTTACTCACCCTCTTGCGCTTCGTGTTTATTGGGTTGTGAATTTCTTTATCACTTCGTTGTTCACAGTTTCTGCTGTTATGCGTTTGGTCATCATCGTGGACGTGAATGAAAGCAACGACTTCAAGGTGGATGACGTGGTCTCTTTCATTTCGCTCCCTTTGTCGTTATTTCTTCTTTTTGCTGGGGTTAAAGGATCCACCGGTATTGTCTTGTCGACAGAAGAAAGTCGGCAACTTGTTGAGGAGGAAACTAGGTTGTATGATGGGAGTGAGGGAAAGTCGGAGGTCACTGACTTCGCTTCAGCTTCTATGTTATCTAAGGTTTTCTTTATTTGGATAAATCCATTGTTGAGTGAAGGGTACAAGTCTGCACTGAAGACTGATGATGTTCCAACGCTTTCTCCACAGCACAGAGCTGAGAGGATGTCATCTATTTTTGAATTAAAATGGCCTAAAGCAAACGAGAAGTCGAAGCACCTGGTTAGAATGACTTTGCTCCGTTGCTTTTGGAAGGAGTTGGCCTTCAATGTCGTGCTTGCAATCATCAGGCTCTGTGTCATGTTTGTGGGGCCGGTTCTGATTCAAAGTTTTGTGGATTTCACATCAGGGAAGAGAAGCTCTGAATATGAAGGGTACTACCTCGTGTTGATTCTTCTCGTTGCTAAGTTCATTGAAGTTGTGAGTACTCATCATTTCAACTTCCAATGTCAGAAGCTTGGGACGCTTATACGGAGCGCTGTTATCCCTGCTTTGTACGAGAAGGGGTTAAAACTATCATTCTCTGCTCGGCAGGATCATGGGATAGGAACCATTGTTAATTACATGGCTGTGGATACCCAGCAACTCTCTGACATGATGCTTCAGTTAAATGCTGCGTGGATGATGCCACTTCAGGTTGCCATTGGCATGTTTCTACTTTACAACTGTCTTGGTGCCTCAGTGATCACTGCTTTTCTTGGTCTTCTTGGTGTTTTTGTGTTTGCTGTGATCGGTACCCGCAGGAACAACCGCTTCCAGTATAATGTGATGAAGAACCGCGACTCGAGAATGAAAGCTGTGAATGAGACGCTTAATTACATGCGTGTGATCAAGTTTCAGGCCTGGGAGGAACATTTCAACCACAGAATTATGGGATTCCGTGAGACTGAATTTGGATGGCTCTCCAAGTTTATGTTCTCAATATGTGGCAATATTGTTGTGATGTGGAGCACGCCCTTGTTGATATCAACTCTCACGTTTGGAACGGCTCTTTTGCTGGGAGTTCAACTTGATGCTGCTACGGTCTTCACAACAACAACTGTGTTCAAGATATTGCAGGAGCCCATTAGGACATTCCCACAGTCTATGATATCTCTCTCACAAGCATTAATATCATTGGAGAGACTAGATAAGTTCATGTTGAGCAGGGAATTGTTGGATGATTCAACTGAGAGAGAAGAAGGATGTGGCGGACAAACATCAGTGGAAATCATAGATGGGACTTTTAGTTGGGATGATGATAACACGCAGCAGGACTTGAAAAATATCAATTTGGAGATAAAAAAGGGAGAGATTTCAGCAATTGTTGGGACTGTAGGGTCAGGAAAGTCCTCTCTCCTCGCATCAATTCTTGGAGAGTTGCGTAAGATTTCTGGAAAGGTTCGGGTTTATGGAAGTGTTGCTTATGTTGCACAAACATCTTGGATTCAGAATAGAACTATTGAAGAAAACATTCTCTTTGGTTTACCAATGGACAGGCAGAGGTACAATGAAGCTATCAGGGTTTGTTGTTTGGAGAAAGACTTGGAAATGATGGATTATGGGGATCAGACAGAAATTGGAGAGCGTGGTATCAACTTGAGTGGAGGCCAAAAGCAGCGTATACAACTTGCCAGGGCTGTTTATCAAGACTGTGATGTATATCTTCTCGATGATGTCTTCAGTGCTGTTGATGCTCATACTGGTTCCGAAATATTTAAGGAATGTGTGAGGGGAGCTCTAAAAGGCAAAACCACTGTTCTTGTTACGCACCAAGTAGATTTCCTACATAATGTGGATCAGATATTAGTGATGAGGGACGGCATGATAATCCAATCAGGAAAGTACAATGATCTAGTTGATTCTGGACTGGATTTTAAAGCTCTGGTGGTTGCTCATGAGACCTCCATGGAACTGGTGGGGCAGAGTGTGGTCGTGCCCGCTGAAAATTTGAACAGGCCAACAAAAGCTTCAGCGGTGACTTCTATTTACAAGGGAGCCAGTGGTGAAAGCAATTCTCTTGAACAGGCTGTGTCTAGCAAGAAAAGTTCTAAACTCATCAAAGAAGAGGAAAGAGAAACCGGCAAAGTGAGCTTACATATCTATAAACTCTACTGCACTGAGGCTTTTGGCTGGTGGGGAATTACTTTAGTATTTGTTCTTTCTTTGTTATGGCAAGGATCTTTGATGGCAAGTGATTATTGGCTGGCGTATGAAACCTCAATGGAAAGTGGACTGTTTAACCCTACTCTCTTCATGTCCATTTATACAATTATTACCGCTGTTTCGGTTATCTTGGTGGTGACGAGAACTTACTTCTTTACACTCTTGGGGCTAAAGACTGCACAAATTTTCTTCACACAAATTCTTCGTAGCATCTTGCATGCGCCTATGTCTTTCTTTGACACTACTCCGTCTGGGAGAATTCTAAGCAGGGCTTCCTCTGATCAGAGCAATGTTGATGTCCTACTCCCCTTGTTCACGGGAGTTGTCATTGCCATGTATATTACAATGCTCAGCATCGTCATCGGTTACTATCTAGCATCATCTCGTGAATTAACTCGTCTGGATTCAATTACCAAAGCACCAGTTATTCATCACTTCTCTGAAAGCATTGCTGGGGTCATGACAATCCGTGCATTCAGACAACAGAAGAATTTTTGTGAAGAAAATCTCAAACGGGTGAATGCTAATTTACGTATGGATTTCCACAACTATAGCTGCAATGTGTGGTTGGGAGTGCGCTTAGAGTTGCTTGGAAGCTTTGTCTTTTGCATTTCTGCATTGTTCATGATCATTTTACCCAGTAGTATCATAAAGCCAGAAAATGTTGGTTTATCTCTTTCTTACGGGTTGTCCTTAAACGGTGTCTTGTTCTGGGCTGTATTCATGAGTTGTTTCATCGAAAACAAGATGGTGTCTGTTGAGAGGATAAAGCAGTTTACACATATTCCACCGGAACCGGCATGGAATATCAAGGATCACCTACCTCCTTCAAATTGGCCCAGTCAAGGCAATGTAGATATCAGAGACTTGCAGGTCAGATATCGTCCAAATACTCCTCTGGTGCTCAAAGGCATTACTTTAAGCATTACCGGAGGTGAAAAAGTTGGCGTTGTGGGTCGAACTGGGAGTGGAAAGTCAACTTTAATTCAAGTATTGTTTAGGCTGGTGGAACCTTCGGGAGGGAAAATAGTGGTTGATGGTATTGACATATCCATCTTGGGACTTCACGATCTTAGATCACGGTTTGGCATCATTCCTCAGGAGCCTGTGCTTTTTGAAGGAACTGTCAGAAGCAACATCGATCCAATTGGACAATATACAGATGAAGAAATATGGAAGAGCTTGGAGCGTTGTCAGCTAAAAGATGTTGTTGCAGCTAAGCCTGAAAAGCTTGACTCTTTAGTGGTGGAAAACGGAGAGAACTGGAGTGTGGGCCAAAGACAGCTGCTTTGTCTAGGGCGTGTTATACTTAAGAAAAGCCGACTTTTGTTTATGGATGAGGCAACAGCTTCTGTTGATTCTCAAACTGATGGTGTTATTCAAAAGATCATAAGAGAGGAGTTTGCAGCATGCACCATCATCAGCATTGCTCACAGAATACCCACAGTCATGGACTGTAACAGAGTTTTAGTTGTAGACGCAGGGATAGCGAAAGAATATGACAAGCCTTCCAATTTGCTTCAGAGAGAATCTCTGTTTGGGGCATTAGTTCAAGAATATGCCAACCGATCCAGTGGACTATAA 4560 0.4311 MVLKLHFQKSEVYFTKTLSGHSRWFSSQGTETSMFLSSPAWIKSFSCTFPVKQTSGDMFISTMLQWLRFFFLSPCPQRTILSFVDVVFLLFLFVFTITKLWKRLTSHGGFGTHLNEPLVRNSRSIFLTIRFKLTLTAEVALTILYTVATVLAFSSSSKVPWKQVDDLFWIVHAITHAVLAFVIIHEKIFEAVTHPLALRVYWVVNFFITSLFTVSAVMRLVIIVDVNESNDFKVDDVVSFISLPLSLFLLFAGVKGSTGIVLSTEESRQLVEEETRLYDGSEGKSEVTDFASASMLSKVFFIWINPLLSEGYKSALKTDDVPTLSPQHRAERMSSIFELKWPKANEKSKHLVRMTLLRCFWKELAFNVVLAIIRLCVMFVGPVLIQSFVDFTSGKRSSEYEGYYLVLILLVAKFIEVVSTHHFNFQCQKLGTLIRSAVIPALYEKGLKLSFSARQDHGIGTIVNYMAVDTQQLSDMMLQLNAAWMMPLQVAIGMFLLYNCLGASVITAFLGLLGVFVFAVIGTRRNNRFQYNVMKNRDSRMKAVNETLNYMRVIKFQAWEEHFNHRIMGFRETEFGWLSKFMFSICGNIVVMWSTPLLISTLTFGTALLLGVQLDAATVFTTTTVFKILQEPIRTFPQSMISLSQALISLERLDKFMLSRELLDDSTEREEGCGGQTSVEIIDGTFSWDDDNTQQDLKNINLEIKKGEISAIVGTVGSGKSSLLASILGELRKISGKVRVYGSVAYVAQTSWIQNRTIEENILFGLPMDRQRYNEAIRVCCLEKDLEMMDYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDVYLLDDVFSAVDAHTGSEIFKECVRGALKGKTTVLVTHQVDFLHNVDQILVMRDGMIIQSGKYNDLVDSGLDFKALVVAHETSMELVGQSVVVPAENLNRPTKASAVTSIYKGASGESNSLEQAVSSKKSSKLIKEEERETGKVSLHIYKLYCTEAFGWWGITLVFVLSLLWQGSLMASDYWLAYETSMESGLFNPTLFMSIYTIITAVSVILVVTRTYFFTLLGLKTAQIFFTQILRSILHAPMSFFDTTPSGRILSRASSDQSNVDVLLPLFTGVVIAMYITMLSIVIGYYLASSRELTRLDSITKAPVIHHFSESIAGVMTIRAFRQQKNFCEENLKRVNANLRMDFHNYSCNVWLGVRLELLGSFVFCISALFMIILPSSIIKPENVGLSLSYGLSLNGVLFWAVFMSCFIENKMVSVERIKQFTHIPPEPAWNIKDHLPPSNWPSQGNVDIRDLQVRYRPNTPLVLKGITLSITGGEKVGVVGRTGSGKSTLIQVLFRLVEPSGGKIVVDGIDISILGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYTDEEIWKSLERCQLKDVVAAKPEKLDSLVVENGENWSVGQRQLLCLGRVILKKSRLLFMDEATASVDSQTDGVIQKIIREEFAACTIISIAHRIPTVMDCNRVLVVDAGIAKEYDKPSNLLQRESLFGALVQEYANRSSGL 1519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02132 1519 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 677 899 IPR027417 -
Vimu6g02132 1519 FunFam ABC transporter C family member 10 348 661 - -
Vimu6g02132 1519 CDD ABC_6TM_ABCC_D2 985 1252 IPR044726 GO:0140359
Vimu6g02132 1519 Gene3D ABC transporter type 1, transmembrane domain 342 657 IPR036640 GO:0005524|GO:0016020
Vimu6g02132 1519 Gene3D ABC transporter type 1, transmembrane domain 946 1258 IPR036640 GO:0005524|GO:0016020
Vimu6g02132 1519 FunFam ABC transporter C family member 4 662 920 - -
Vimu6g02132 1519 FunFam ABC transporter C family member 3 1260 1511 - -
Vimu6g02132 1519 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 679 902 IPR003439 GO:0005524
Vimu6g02132 1519 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1270 1510 IPR027417 -
Vimu6g02132 1519 SUPERFAMILY ABC transporter transmembrane region 982 1257 IPR036640 GO:0005524|GO:0016020
Vimu6g02132 1519 Pfam ABC transporter 1294 1442 IPR003439 GO:0005524
Vimu6g02132 1519 Gene3D - 658 915 IPR027417 -
Vimu6g02132 1519 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 987 1240 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu6g02132 1519 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 291 1513 - -
Vimu6g02132 1519 CDD ABC_6TM_ABCC_D1 366 653 IPR044746 GO:0140359
Vimu6g02132 1519 Coils Coil 1148 1168 - -
Vimu6g02132 1519 Gene3D - 1261 1510 IPR027417 -
Vimu6g02132 1519 SUPERFAMILY ABC transporter transmembrane region 355 657 IPR036640 GO:0005524|GO:0016020
Vimu6g02132 1519 Pfam ABC transporter transmembrane region 986 1113 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu6g02132 1519 Pfam ABC transporter transmembrane region 365 632 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu6g02132 1519 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 368 645 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu6g02132 1519 Pfam ABC transporter 697 830 IPR003439 GO:0005524
Vimu6g02132 1519 SMART AAA_5 706 887 IPR003593 GO:0016887
Vimu6g02132 1519 SMART AAA_5 1303 1487 IPR003593 GO:0016887
Vimu6g02132 1519 CDD ABCC_MRP_domain1 679 878 - -
Vimu6g02132 1519 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1279 1511 IPR003439 GO:0005524
Vimu6g02132 1519 ProSitePatterns ABC transporters family signature. 804 818 IPR017871 GO:0005524|GO:0016887
Vimu6g02132 1519 CDD ABCC_MRP_domain2 1275 1495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02132 Vimu-Chr6 18868535 18874876 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02132 1260 1517 Calmodulin-binding Proteins AT2G36910 28.467 1.33e-28 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02132 - K05666 gmx:100808752 2430.98