Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02130 ATGTCCCTTGCATCTTCAACCCTCTCCTGTGCATTCCCTGTGAAACAAACCTCAGAGGACACGTTTGTCTCAACTATGCTTCAATGGCTGAGATATATTTTCCTCACACCTTGTCCTCAAAGAGCTATATTGTCTTTCGTTGATGTCGTGCTCCTCTTGTTTCTCTTCGTGTTTGCTGCCACCAAGCTCTGGAAAAGGTCCACCTTCAATGGTGGCTCCACTACTGACCTCAGCAGACCATTCATCAGAAAGAACAGACCCGTTTACTCAATAACTGTGCGGTTTAAGTTAACCATAACTGTAGTGGTTGTTTTGACTATACTCTACACGGTTGCTTCTGTTCTTACGTTTAGCAGTACCTCCATGGCGCCGTGGAAGCAGGTTGACGAGGTGTTTTGGTTAGTCCAAGCCATAACACAAGCTGTGCTTGCCTTCTTCATCATCCACGAGAAAAGGATTCAGGTCGTTGCACACCCTCTTTCCGTTCGAGTTTATTGGATTGTATCTTTCTTTGTCATTTCTTTGTTCACTGTGTCTGCGGTTATACGTTTGGTCTCGGTGGACGTGGATGAAGCCTTCGGCTTCGGGGTGGATGACGTGGTCTCTTTCATTTCGTTCCCGCTGTCGTTATTTCTTCTTTTTGTGGCGCTTAAAGGATCCACCGGCATTGTTTTGGCTACAGAAGAAACACGACCACTTGTGGATGGAAAAACTAAGTTGCATGATGGTACTGAGAGAAAATCCGAGGTTACTGGTTTTGCTTCAGCTTCTCTATTATCCAAGGCTTTTTGGATTTGGATAAACCCCTTACTGAGTAAAGGGTACAAGTCCGTGCTGAAGATTGATGATATTCCAACGCTTTCTCCGGAGCATAGAGCTGAGAGAATGTCATCCATTTTTGAATCTAAATGGCCTATTTCAAACGAGACATCAAAGCATCCTGTTAGAATGACTTTGCTTCGGTGCTTTTGGAAGGAGTTAGCCTTAAATGCCGTGCTTGCAATCATTAGGCTCTGTGTCATGTTTGTGGGGCCGATTCTGATACAAAGTTTTGTGGATTTCACATCAGGGAAGAGAAGCTCTGAATATGAAGGATACTACCTCGTGTTGATTCTTTTCGTTGCTAAGTTCATTGAAGTCATGGCTACTCATCATTTCAACTTCCAAGCTCAAAAGCTTGGGATGCTTATACGCTCCACTCTTATCTCCACTTTGTATAGAAAGGGGTTAAAGCTATCATTCTCTTCTCGGAAGGAACATGGAGTTGGGACAGTTGTGAATTACATGGCAGTGGATACCCAGCAACTCTCTGACATGGTGCTCCAGTTACACGCTGTGTGGATGATGCCACTCCAAGTTGGTATTGGCTTGGTTCTGCTTTACAATTGTTTAGGTGCCTCAGTTATAGGCGCGTTTCTTGCTCTGCTCGGTGTTTTTGTCTATTCTGTGTTGGGCACCCAGAGAAACAACAAGTTCCAACAAAATCTGATGGTGAGCCGGGACTCCAAAATGAAAGCTGTGAATGAGATGCTTAGCTACATGCGTGTGATCAAGTATCAGGCCTGGGAGGAACATTTCAATCAGAGAATTTTGGGTTTCCGTGAAACGGAGTATGGGTGGCTCTCCAAGCTGCTGTTCTCAATTTGTGGCACCATTGTTGTGTTGTGGAGCACACCGTTTTTGGCGTCAACTCTTACATTTGGAACGGCTATTTTGTTGGGAGTTCAACTTGATGCAGGCACAGTGTTCACTACAACAGCTGTGTTCAGGTTATTGCAGGAGCCTATTAGGACATTCCCACAGTCTATGATATCTCTTTCACAAGCAAGGATATCACTGGAGAGGTTAGACAGGTTCATGTTGAGCGGAGAATTGTCAAATGATTCAGTTGAGAGAGAGGAAGGATGTGGTGGACAGACAGCCGTGGAAATCATACGTGGAACTTTTAGTTGGGATGATGATAACACTCAGCAGGACTTGAAAAATATCAATTTGAATATTAAAAAGGGTGAGCTTACAGTGATTGTTGGGACCGTAGGGTCAGGAAAGTCGTCTCTTCTTGCATCAATTCTTGGAGAGATGCACAAGATTTCTGGAAAGGTTCGGGTTTGTGGGAGTGTTGCTTATGTTGCACAGACATGTTGGATTCAAAATGGGACCATTGAAGAAAACATTCTCTTCGGTTTACCTATGGACAGACAGAGGTACGATGAAGTTATCAGGGCGTGTTGTTTGGAGAAAGATTTGGAAATGATGGATTATGGGGATCAGACAGAAATTGGAGAACGTGGTATCAACCTAAGCGGAGGCCAGAAGCAGCGTATACAACTTGCCAGGGCTGTGTATCAAGACTGTGATGTATATCTTCTTGATGATGTCTTCAGTGCTGTTGATGCTCATACAGGTTCTGAAATATTTAAGGAATGCGTGAGGGGAGCTCTAAGAGGCAAGACCACTATTCTTGTAACACATCAAGTAGATTTCTTACGTAATGTGGATCGTATATTAGTGACGAGGGACGGTAAGATAGTTCAATCAGGGAAATATGATGATCTATTAGAGTTTGGAATGGATTTTAAAGCTCTCGTCGTTGCGCATGAGAGCTCCATGGAATTAGTGGAGCACAGTATGGTCATGCCAGGTGAAAATTTGAACAAACCAACGATGGCTCTAGAGACAGCTTCAATTAACAGGGGAACCAATGGTGAAAACAATTCTATTGATAAGCCTAAGTGTGGGAAGAAAAGTTCTAAACTCGTCCAAGAAGAGGAGAGAGCAACTGGAAAAGTGAGCTTACGTATGTATAAACTCTATTGCACTGAGGCGTTTGGGTGGTGGGGCATTACAACAGTATTGGTCCTGTCTTTGTTATGGCAAGCGTCTTTGATGGCAAGTGATTATTGGTTGGCATATGAAACCTCAGAAGAACGTGCTAAATTGTTTAACCCTTCTTTGTTCATCTACGTCTATGCAATTATTGCTGTTGTTTCCAGTGTTTTGTTAGTGGCAAGATCCTACTTCTTTACTCTCATGGGGCTAAGGACAGCACAGTTATTCTTCACACAAATTCTTCATAGCATCTTGCATGCGCCCATGTCTTTCTTTGACACCACGCCATCTGGAAGAATTCTAAGTAGGGCATCCACTGATCAAGCCAATGTTGATGCCCTTCTACCCTTATACATGGGAGCTATTATAATCATGCACTTATCGATGCTCGGCATCTTCATCATAACCTGTCAAAATTCTTGGCCAACTGTGATTTTGATAATTCCTCTTGTTTGGTTAAATATGTGGTACCGGGGTTACTATCTTGCATCATCTCGGGAATTTACTCGCATGGATTCAATTACCAAAGCCCCAGTTATTCATCACTTCTCCGAAAGCATTGCAGGGGTCATGACAATCCGTTCATTCAGAAAGCAAAAGATATTCTGTGATGAAAATCTGAAACGGGTGAATGCTAATTTGAGAATAGATTTCCACAACTATAGTTGTAATGAGTGGTTGGGATTCCGCTTAGAATTGATTGGAAGTTTTGTCGTTTGCATTTCTGCCATGTTCATGATCATCTTACCCAGCAGTATCATAAAGCCAGAAAATGTCGGTTTATCTCTCTCTTATGGGTTGTCCTTAAACACTGTCTTGTTCTGGGCTGTATACATGAGTTGTTTCATCGAAAACAAGATGGTGTCTGTTGAGAGGATAAAGCAGTTTACAAATATTCCATCGGAACCAGCATGGAATATCAAGGATCACCTACCTCCTTCAAACTGGCCCGGTCAAGGCAATGTAGATATCAGAGACTTGCAGGTCAGATATCGTCCAAATACTCCTCTTGTGCTCAAAGGCATTACTTTAAGCATTGCGGGAGGTGAAAAAGTTGGTGTTGTGGGTCGAACTGGGAGTGGAAAGTCAACTTTAATTCAAGTATTATTTAGGCTGGTGGAACCTTCGGGAGGGAAAATAGTGGTTGATGGTATTGACATATCCATCTTGGGACTTCACGATCTTAGATCACGGTTTGGCATCATTCCTCAGGAGCCTGTGCTTTTTGAAGGAACAGTCAGAAGCAACATTGATCCAATTGGACAATATACAGATGAAGAAATATGGAAGAGCTTGGAGCGTTGTCAGCTAAAAGATGTTGTTGCTGCTAAGCCTGAAAAGCTTGACTCTTTAGTGGTGGAAAACGGAGAGAACTGGAGTGTGGGCCAAAGACAGCTGCTTTGTCTAGGGCGTGTTATACTTAAGAAAAGCCGACTTTTGTTTATGGATGAGGCAACAGCTTCTGTTGATTCTCAAACTGATGGTGTTATTCAAAAGATCATAAGAGAGGAGTTTGCAGCATGCACCATCATCAGCATTGCTCATAGAATACCCACAGTCATGGACTGTAACAGAGTTTTAGTTGTAGACGCAGGGATAGCGAAAGAATATGACAAGCCTTCCAATTTGCTTCAGAGAGAATCTCTGTTTGGGGCATTAGTTCAAGAATATGCCAACCGATCCAGTGGACTATAA 4524 0.4295 MSLASSTLSCAFPVKQTSEDTFVSTMLQWLRYIFLTPCPQRAILSFVDVVLLLFLFVFAATKLWKRSTFNGGSTTDLSRPFIRKNRPVYSITVRFKLTITVVVVLTILYTVASVLTFSSTSMAPWKQVDEVFWLVQAITQAVLAFFIIHEKRIQVVAHPLSVRVYWIVSFFVISLFTVSAVIRLVSVDVDEAFGFGVDDVVSFISFPLSLFLLFVALKGSTGIVLATEETRPLVDGKTKLHDGTERKSEVTGFASASLLSKAFWIWINPLLSKGYKSVLKIDDIPTLSPEHRAERMSSIFESKWPISNETSKHPVRMTLLRCFWKELALNAVLAIIRLCVMFVGPILIQSFVDFTSGKRSSEYEGYYLVLILFVAKFIEVMATHHFNFQAQKLGMLIRSTLISTLYRKGLKLSFSSRKEHGVGTVVNYMAVDTQQLSDMVLQLHAVWMMPLQVGIGLVLLYNCLGASVIGAFLALLGVFVYSVLGTQRNNKFQQNLMVSRDSKMKAVNEMLSYMRVIKYQAWEEHFNQRILGFRETEYGWLSKLLFSICGTIVVLWSTPFLASTLTFGTAILLGVQLDAGTVFTTTAVFRLLQEPIRTFPQSMISLSQARISLERLDRFMLSGELSNDSVEREEGCGGQTAVEIIRGTFSWDDDNTQQDLKNINLNIKKGELTVIVGTVGSGKSSLLASILGEMHKISGKVRVCGSVAYVAQTCWIQNGTIEENILFGLPMDRQRYDEVIRACCLEKDLEMMDYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDVYLLDDVFSAVDAHTGSEIFKECVRGALRGKTTILVTHQVDFLRNVDRILVTRDGKIVQSGKYDDLLEFGMDFKALVVAHESSMELVEHSMVMPGENLNKPTMALETASINRGTNGENNSIDKPKCGKKSSKLVQEEERATGKVSLRMYKLYCTEAFGWWGITTVLVLSLLWQASLMASDYWLAYETSEERAKLFNPSLFIYVYAIIAVVSSVLLVARSYFFTLMGLRTAQLFFTQILHSILHAPMSFFDTTPSGRILSRASTDQANVDALLPLYMGAIIIMHLSMLGIFIITCQNSWPTVILIIPLVWLNMWYRGYYLASSREFTRMDSITKAPVIHHFSESIAGVMTIRSFRKQKIFCDENLKRVNANLRIDFHNYSCNEWLGFRLELIGSFVVCISAMFMIILPSSIIKPENVGLSLSYGLSLNTVLFWAVYMSCFIENKMVSVERIKQFTNIPSEPAWNIKDHLPPSNWPGQGNVDIRDLQVRYRPNTPLVLKGITLSIAGGEKVGVVGRTGSGKSTLIQVLFRLVEPSGGKIVVDGIDISILGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYTDEEIWKSLERCQLKDVVAAKPEKLDSLVVENGENWSVGQRQLLCLGRVILKKSRLLFMDEATASVDSQTDGVIQKIIREEFAACTIISIAHRIPTVMDCNRVLVVDAGIAKEYDKPSNLLQRESLFGALVQEYANRSSGL 1507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02130 1507 Gene3D ABC transporter type 1, transmembrane domain 911 1246 IPR036640 GO:0005524|GO:0016020
Vimu6g02130 1507 Gene3D ABC transporter type 1, transmembrane domain 312 621 IPR036640 GO:0005524|GO:0016020
Vimu6g02130 1507 FunFam ABC transporter C family member 10 311 624 - -
Vimu6g02130 1507 CDD ABCC_MRP_domain1 642 842 - -
Vimu6g02130 1507 CDD ABC_6TM_ABCC_D1 329 616 IPR044746 GO:0140359
Vimu6g02130 1507 Gene3D - 1249 1498 IPR027417 -
Vimu6g02130 1507 SMART AAA_5 1291 1475 IPR003593 GO:0016887
Vimu6g02130 1507 SMART AAA_5 669 850 IPR003593 GO:0016887
Vimu6g02130 1507 Pfam ABC transporter 660 793 IPR003439 GO:0005524
Vimu6g02130 1507 Pfam ABC transporter 1282 1430 IPR003439 GO:0005524
Vimu6g02130 1507 FunFam ABC transporter C family member 3 1248 1499 - -
Vimu6g02130 1507 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 642 862 IPR027417 -
Vimu6g02130 1507 CDD ABC_6TM_ABCC_D2 948 1240 IPR044726 GO:0140359
Vimu6g02130 1507 Gene3D - 622 880 IPR027417 -
Vimu6g02130 1507 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 642 865 IPR003439 GO:0005524
Vimu6g02130 1507 Pfam ABC transporter transmembrane region 981 1201 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu6g02130 1507 Pfam ABC transporter transmembrane region 329 595 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu6g02130 1507 CDD ABCC_MRP_domain2 1263 1483 - -
Vimu6g02130 1507 SUPERFAMILY ABC transporter transmembrane region 934 1245 IPR036640 GO:0005524|GO:0016020
Vimu6g02130 1507 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1258 1498 IPR027417 -
Vimu6g02130 1507 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 328 608 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu6g02130 1507 FunFam ABC transporter C family member 5 912 1246 - -
Vimu6g02130 1507 FunFam ABC transporter C family member 4 625 883 - -
Vimu6g02130 1507 ProSitePatterns ABC transporters family signature. 767 781 IPR017871 GO:0005524|GO:0016887
Vimu6g02130 1507 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 254 1501 - -
Vimu6g02130 1507 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 951 1228 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu6g02130 1507 SUPERFAMILY ABC transporter transmembrane region 318 616 IPR036640 GO:0005524|GO:0016020
Vimu6g02130 1507 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1267 1499 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02130 Vimu-Chr6 18859691 18865813 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02130 642 854 Calmodulin-binding Proteins AT2G36910 32.751 3.26e-25 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02130 - K05666 vum:124843531 2589.3