Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02129 ATGAAGTTCTGCAAAAAATACCAGGAATACATGCAAGGCCAGGAGAAGAAGCTTCCAGGCGTAGGATTCAAGAAGCTCAAGAAAATCTTGAAAAGGTGCAGGAAAAACTCTCCATCTCAGAAACCCCGTAATGCGCCCTTTGCCGCCAAAACCTGCCCAGACCAATGCCCAGTGTGCGATGGAACCTTCTTCCCTTCCCTTCTGAATGAAATGTCAGATGTAGTGGGGTCTTTTAATCAGCGTGCGCAGAAATTGTTGGAGCTGCATCTGGCTTCTGGCTTCAGAAAGTACTTTTTCTGGATCAAAGACAGATTGCAAGGAAACCATACTGCTCTGGTTCAAGAAGGCAAAGATCTTGTCACGTATGCACTCATAAATGCCATTGCAATTAGAAAAATACTCAAGAAATATGATAAGATTCATTATTCGAAGCAAGGGCAATTATTCAAGTCGCAGGTCCAGAGTATGCACAAGGAGATTCTTCAGAGTCCCTGGCTTTGTGAGCTTATGGCCTTCCACATCAATTTAAGGGAAACTAAGGTCAAGTCAAGGAAGGCACATGCTCTATTCGATGGATGTTCTCTCACAATTAAGGATGGGAAGCCCTCCCTTACTTGTGAGCTCTTTGATTCTATCAAATTGGATGTTGACTTGACTTGTTCTATATGCTTGGACACAGTGTTTGATCCGGTTTCTCTGACTTGTGGCCACATATTCTGCTACATCTGTGCTTGCTCGGCTGCATCAGTATCCATTGTTAACGGACTTAAGTCTGCAGATTCTAAGAAGAAATGTCCTCTATGCCGCGAGGACTCTGTATATGAAGGTGCTGTGCACTTGGAAGAACTGAATATTCTGTTAGGCAGAAGCTGTCAGGAATACTGGGAGCAGAGGCTTGAGACAGAGAGGGTGGAGAGGATTAAGCAAATAAAGGAACACTGGGATTCACAGTGTAGGGCATTTGTAGGTGTCTAA 975 0.441 MKFCKKYQEYMQGQEKKLPGVGFKKLKKILKRCRKNSPSQKPRNAPFAAKTCPDQCPVCDGTFFPSLLNEMSDVVGSFNQRAQKLLELHLASGFRKYFFWIKDRLQGNHTALVQEGKDLVTYALINAIAIRKILKKYDKIHYSKQGQLFKSQVQSMHKEILQSPWLCELMAFHINLRETKVKSRKAHALFDGCSLTIKDGKPSLTCELFDSIKLDVDLTCSICLDTVFDPVSLTCGHIFCYICACSAASVSIVNGLKSADSKKKCPLCREDSVYEGAVHLEELNILLGRSCQEYWEQRLETERVERIKQIKEHWDSQCRAFVGV 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02129 324 CDD SPX_BAH1-like 2 147 - -
Vimu6g02129 324 SMART ring_2 220 268 IPR001841 -
Vimu6g02129 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 207 322 IPR013083 -
Vimu6g02129 324 Pfam Zinc finger, C3HC4 type (RING finger) 217 271 - -
Vimu6g02129 324 ProSiteProfiles Zinc finger RING-type profile. 220 269 IPR001841 -
Vimu6g02129 324 SUPERFAMILY RING/U-box 213 272 - -
Vimu6g02129 324 ProSitePatterns Zinc finger RING-type signature. 235 244 IPR017907 -
Vimu6g02129 324 CDD RING-HC_BAH1-like 210 283 - -
Vimu6g02129 324 ProSiteProfiles SPX domain profile. 1 151 IPR004331 -
Vimu6g02129 324 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 323 IPR033326 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02129 Vimu-Chr6 18855903 18858347 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02129 217 271 C3H Transcription Factor Family AT4G28270 40.000 4.45e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02129 K16275 - gmx:100787904 619.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02129 6 18855903 18858347 Vimu6g02129 6 18855903 18858347 ECH
Vimu3g01769 3 32062309 32072392 Vimu6g02129 6 18855903 18858347 PCT