Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02116 ATGGGGATCGATTTGAAGGCAGGAGGTAAGTCCAAAAAGACCAAGCGAACCGCCCCAAAATCCGATGATATTTACCTCAAGCTCCTCGTCAAGTTGTACCGTTTTCTTGATCGGAGGACTGGGAGTAATTTCAATGCCGTCATTCTCAAGCGGCTTTTCATGAGCAAGGTCAACAAGCCTCCACTATCCCTCTCTAGATTGATCCGTTACACCAAGGGAAAGGAGGATAAGATAGCTGTGGTGGTTGGGGCCGTGACCGATGATATTCGTGTCTACGAGGTGCCTGCTCTGAAGGTAGCAGCACTGAGGTTCACTGAAACTGCCAGAGCTAGAATTGAGAAAGCTGGCGGGGAATGCCTCACCTTTGATCAACTGGCTCTTAGAGCTCCTCTCGGCGAAAACACGGTTCTTCTCAGAGGTCCCAAGAATGCACGTGAGGCCGTCAAGCACTTTGGACCGGCTCCTGGTGTGCCCCATAGCCACACCAAGCCCTATGTCCGTTCAAAGGGACGGAAATTTGAGCGGGCCAGAGGGAGAAGGAATAGCAGAGGCTTTAGAGTTTGA 564 0.5124 MGIDLKAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLDRRTGSNFNAVILKRLFMSKVNKPPLSLSRLIRYTKGKEDKIAVVVGAVTDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGENTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGRRNSRGFRV 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02116 187 FunFam 60S ribosomal protein L18 1 187 - -
Vimu6g02116 187 Gene3D - 1 187 - -
Vimu6g02116 187 Pfam Ribosomal protein 60S L18 and 50S L18e 2 187 IPR021131 -
Vimu6g02116 187 SUPERFAMILY Ribosomal proteins L15p and L18e 20 139 IPR036227 -
Vimu6g02116 187 PANTHER 60S RIBOSOMAL PROTEIN L18 1 187 IPR000039 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02116 Vimu-Chr6 18762652 18764186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02116 3 187 Cytoplasmic Ribosomal Protein Gene Family AT2G47570 79.570 1.43e-103 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02116 K02883 - gmx:100306301 336.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02116 6 18762652 18764186 Vimu6g02116 6 18762652 18764186 ECH