Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02114 ATGACTATGGAGCCAGACATTGAATCCAAGTATTCACATAACGGTAAGGTTATGGTGGGCACTGCCATTCTCCTATTCCTTCTCATAATCCTCATCATTCTCTTCAACGCCTACATCCGCTACTGCCGCCGGCTCCGCCGCGGCTCTCTCTTCAAGTCCCTTCCCACTTTTTCCTTCTCCGCCACCGTGCACAGCTCTCTCCAGGACTGCGCCGTGTGCCTGTCGGAGTTCGCCGACGGTGATAAAGTCCGCGTGCTCCCCAACTGTAAGCATGGTTTCCACACCCACTGCATCGACGAGTGGTTTGCATCTCACTCCACATGTCCTCTGTGCCGAACTCCGGCTCAGCCGGCCAAGGGTTGCTCTGATGATGAACCTGGTTCGGTTCCAGTTTCCGAAGCGGACGAGGGTTGTTCTTCGTCTTTGGGTACTCCGATTGCGTGTCCGAGAAAGGCGTTGGATGTAGTAATAGAGATGGGAGATGTGGAAAGAGGTTTGAATACTGCAACAGAAGATGACAGATTCAGATGCTCATTGAAAAGGTTCTGTAACGCTTGA 558 0.5233 MTMEPDIESKYSHNGKVMVGTAILLFLLIILIILFNAYIRYCRRLRRGSLFKSLPTFSFSATVHSSLQDCAVCLSEFADGDKVRVLPNCKHGFHTHCIDEWFASHSTCPLCRTPAQPAKGCSDDEPGSVPVSEADEGCSSSLGTPIACPRKALDVVIEMGDVERGLNTATEDDRFRCSLKRFCNA 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02114 185 SMART ring_2 70 111 IPR001841 -
Vimu6g02114 185 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 49 132 - -
Vimu6g02114 185 Pfam Ring finger domain 69 112 IPR001841 -
Vimu6g02114 185 ProSiteProfiles Zinc finger RING-type profile. 70 112 IPR001841 -
Vimu6g02114 185 SUPERFAMILY RING/U-box 50 119 - -
Vimu6g02114 185 CDD RING-H2_EL5-like 69 112 - -
Vimu6g02114 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 120 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02114 Vimu-Chr6 18753311 18753925 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02114 11 120 Rapid Response to Elicitors AT3G16720 34.932 8.25e-27 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02114 - - pvu:PHAVU_001G208400g 299.286