Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02113 ATGGAGCCAGACATTGAATCGGAATACGCATACGCATATAAAAGCAAGGTTATGGTGGGCACTGCCATTCTCGCCATCCTTCTCATAATCCTCATCGTTCTCTTCAACCTCTGCGTCCGCTTCTGCCGCCGTCGCCGCGGCGCTCTCTTGTCCCGTTCTCTTCCCACTTTTTCCTTTTCTGCTGCCGTGCATGGTGGTTCTTTGCAGGAATGTGCCGTGTGCCTGTCAGAGTTTGCCGACGGTGATAAAGTTCGCGCACTCCCCAACTGTAAGCATGGTTTCCACACCCACTGCATCGACTCGTGGTTTGCCTTTCACCTCACGTGTCCTCTGTGCCGAACACCGGTTGAACCGGTCAAGGGTTGCTCTAACAATGAACCCGGTTCGGTTCCAGTTTCCGAAGCAGACGAGGGTTGTTCTTCGTCTTTGGGTCCCCCAATTACGTGTCCGAGAGAGGCGTTGGATGTAGTGATAGAGGTGGGAGATGTGGAAAGAGGTTTGAATCCTGCAACTGAATATCACGGATTCAGATGCTCATTGATGAGGTTTTGTAAGGTTTAA 561 0.5152 MEPDIESEYAYAYKSKVMVGTAILAILLIILIVLFNLCVRFCRRRRGALLSRSLPTFSFSAAVHGGSLQECAVCLSEFADGDKVRALPNCKHGFHTHCIDSWFAFHLTCPLCRTPVEPVKGCSNNEPGSVPVSEADEGCSSSLGPPITCPREALDVVIEVGDVERGLNPATEYHGFRCSLMRFCKV 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02113 186 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 31 134 - -
Vimu6g02113 186 CDD RING-H2_EL5-like 70 113 - -
Vimu6g02113 186 ProSiteProfiles Zinc finger RING-type profile. 71 113 IPR001841 -
Vimu6g02113 186 Pfam Ring finger domain 70 113 IPR001841 -
Vimu6g02113 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 121 IPR013083 -
Vimu6g02113 186 SMART ring_2 71 112 IPR001841 -
Vimu6g02113 186 SUPERFAMILY RING/U-box 55 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02113 Vimu-Chr6 18747592 18748152 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02113 10 121 Rapid Response to Elicitors AT3G16720 33.108 1.66e-21 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02113 - - var:108328797 247.669