Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02111 ATGATCATTAAGCGGAGCATGAAAACTGAAATTCCAAAACGGTTCAAGTCAGAAAAACTAGGGGATTCGGAGATTCATAAAGAGAGGAGAAAAAATGGGGTTTTTTCTGCTGAAGGAGTCTCTGGATCCAGTGAGACGCCGTCCAATTCAAATTCGGTGGACTTCAATGGCACAATTCGAGACCTGCCCCCGCAATCAGAAGAAGGGGTTCCTGCCATTCAAGCCCAGTCTTCTAGAGGTCGTGCCAAGAAGCTTCCTTGCAGGTTCAGTGATTCTGTTCTTTACGAACGACTAGGGTCTGAAAACGGGAATAGGAATGTATTACAAGACGTTGCTGCCATGAGTAGTAAGCGAGATTCTCCTTCTTTTCCATGTTCTGCTGAGCAAAGAGATTCCGAATACTCTGTTAAGACTGTTAGAAAGACTGTTAGTGGAGGTCGTTCTGTGTTTGTTAAAGAGAAGAGTGATGCTGTGCCTGGACTAAGTACCCACGTTGAAAGTGTGAATGGAAGTGTCAAAAGGAAGAGGGATGCTTGCAGATTGGATGATTTTCGTTTGGGTGATATAGTTTGGGCAAAGTGTGGGAAGACCCATCCTGCTTGGCCTGCTGTAGTCATTGATCCTTTCTTTCGAGCTCCCAAATCCGTCATAAACTGCTGTGTCCCTTCTGCACTTTGTGTTATGTTTTTTGGTTACTCCAAAAACGGGAATCGAAGGGACTATGCCTGGGTGAAGCAGGGGATGATATTCCCCTTCTGGGAATTCATGGACAGGTTCCAGGGGCAGATCAAACTGTACAAAAATAAAGCAAGTGACTTTCACAAGGCAATGGAAGAGGCAATGTTGGCCGAAGATGGCATTTTGGACTTACACCTGGAAGCTGAGCAAAATTTGGTGGCTGCGGATTCCCCGGTTGACCACCGTCATTCCTATAAAGATCAGGGTACACTATCTTGTGCTGGCTGTGGTTTGGTGTTGCCATGCAAAACCATAAAGAAGATTAAGGATTCAAGTTGTGCTCCTCAGCACTATTGCAAGCCCTGTGTAAAGTTAATAAAATCGAAACAATATTGTGGGATTTGCAAAAAGATTTGGCATCATTCAGACGGTGGAAATTGGGTATGTTGTGATGGTTGTAATGTTTGGGTGCATGCTGAGTGTGACAAAATTTCCAGTAAACTTTTCAAGGATCTGGAAAATATGGATTATTATTGCCCCGATTGCAAGGGAAAATTTAATTGTAAATTATCAACATCTCATGCACAGAAGTCAAAAAAGATATCAATGGAGGATAGCCAAAAACTTGTATTACCTGAAAATATTGCTGTGGAAGATCAAACTGTTCTAGATTTATTAGCCTACCTTAATAGGTTCACAAGCAAACCTATGTCCGATCTGGGAACAAGGTTGTGTGCAATTGCGGCTTGTGTAGTTCTAGGAAGTATACTCTTACTGAATGGGAAAGACACGCAGAGAAGTACGAGCCAGTTTATGCAAAATGGACAACAGAAAGATGTGCCATTTGCAGATGGGTCGAAGATTGGGAATATAACAAAATTATCATCTGTAACAGGTGTTGTCATCATTGTTCATGTTAAGATGGATCTAAAAAAGTGCCAAATGGCTGTCCACCAAGAATGCTACGGGGCAAATAATGTTCAGGACTTTACTTCCTGGGTTTGTAGAGTTTGTGAAACTCCTGATGTTGAGAGAGAGTGTTGTCTCTGCCCAGTAAAAGGTGGGGCTCTGAAACCAACTGATGTTGAGATGTTGTGGGTTCATGTCACATGCGCTTGGTTTCAGCCTGAAGTTCTTTTCCAAAATCATGAGGCAATGGAACCGGCCACTGGAATCCTCAAGATTCCTCGTAATTCCTTTTCGAAGTTGCATTCGACAGAAAAGAATGGGACAACAACAACGAAGACGCTAATATACTGTGCAAATCACAGGTTTGAGCTCTGGGTCCCAAACCCAGATTCAGGACTGGTTATACATACACCCATGGAGGTATTCTCACCGACAATTTCGCTTCAAAATCACCCGAGGTGCTTCAGGGGATCAAGGCTGGCTTCAACAAAGAGTGTAGAACTTCTTGAACCTTCAAACTCTGAAATTCATGACGTTGATCCACTCTCCGCTGCCCGAATTCGTGTGTACGAAAGGTCTTCCAATAAGAAGATTGCTGCGCCTGCAATTCACTTGCTTGGGGGGCCAAAGCTTCACTCTTTAAGTGAAATAACTCAGTTGAATGGTATTAAGGATGATCAAGCTCTTGAATTTTCTTCTCTTAAGGAACGTCTTCATCATTTACGGAAGACAGAAAGCCAAAGAGTTTGCTTAGGAAAATCAGGAATTCATGGATGGGGCCTCTTTGCTCGTAGAGATTTACAAGAAGGAGAAATGGTGGTTGAATATCGTGGTGAGCAGGTACGACGTAGTATTGCAGACCTAAGGGAAGCAAAGTATCGTTCAGAAGGCAAAGATTGTTACTTGTTCAAGATTAGTGATGAAGTGATGATTGACGCAACGGATAAGGGCAATATTGCACGTATAATAAACCATTCTTGCATGCCAAACTGCTTTGCAAGGATTATGTGCTTGAGTGATGAGGAGAATCGGATTGTGCTTATTGCGAAGACCAATGTTTCAGCTGGTGAAGAACTAACGTATAATTACTTGTTCGATGTAGATGAGCCAGATGAACTGAAGGTTCCCTGTCTCTGTAAAGCCCCTAATTGTAGGGAATTTATGAACTAG 2757 0.4273 MIIKRSMKTEIPKRFKSEKLGDSEIHKERRKNGVFSAEGVSGSSETPSNSNSVDFNGTIRDLPPQSEEGVPAIQAQSSRGRAKKLPCRFSDSVLYERLGSENGNRNVLQDVAAMSSKRDSPSFPCSAEQRDSEYSVKTVRKTVSGGRSVFVKEKSDAVPGLSTHVESVNGSVKRKRDACRLDDFRLGDIVWAKCGKTHPAWPAVVIDPFFRAPKSVINCCVPSALCVMFFGYSKNGNRRDYAWVKQGMIFPFWEFMDRFQGQIKLYKNKASDFHKAMEEAMLAEDGILDLHLEAEQNLVAADSPVDHRHSYKDQGTLSCAGCGLVLPCKTIKKIKDSSCAPQHYCKPCVKLIKSKQYCGICKKIWHHSDGGNWVCCDGCNVWVHAECDKISSKLFKDLENMDYYCPDCKGKFNCKLSTSHAQKSKKISMEDSQKLVLPENIAVEDQTVLDLLAYLNRFTSKPMSDLGTRLCAIAACVVLGSILLLNGKDTQRSTSQFMQNGQQKDVPFADGSKIGNITKLSSVTGVVIIVHVKMDLKKCQMAVHQECYGANNVQDFTSWVCRVCETPDVERECCLCPVKGGALKPTDVEMLWVHVTCAWFQPEVLFQNHEAMEPATGILKIPRNSFSKLHSTEKNGTTTTKTLIYCANHRFELWVPNPDSGLVIHTPMEVFSPTISLQNHPRCFRGSRLASTKSVELLEPSNSEIHDVDPLSAARIRVYERSSNKKIAAPAIHLLGGPKLHSLSEITQLNGIKDDQALEFSSLKERLHHLRKTESQRVCLGKSGIHGWGLFARRDLQEGEMVVEYRGEQVRRSIADLREAKYRSEGKDCYLFKISDEVMIDATDKGNIARIINHSCMPNCFARIMCLSDEENRIVLIAKTNVSAGEELTYNYLFDVDEPDELKVPCLCKAPNCREFMN 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02111 918 SMART PWWP_4 184 253 IPR000313 -
Vimu6g02111 918 ProSiteProfiles SET domain profile. 776 893 IPR001214 GO:0005515
Vimu6g02111 918 SMART PHD_3 357 409 IPR001965 -
Vimu6g02111 918 MobiDBLite consensus disorder prediction 1 34 - -
Vimu6g02111 918 Pfam SET domain 787 892 IPR001214 GO:0005515
Vimu6g02111 918 CDD PHD_TCF19_like 358 408 - -
Vimu6g02111 918 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 349 414 IPR013083 -
Vimu6g02111 918 PANTHER PHD FINGER PROTEINS 57 387 - -
Vimu6g02111 918 SMART PostSET_3 902 918 IPR003616 -
Vimu6g02111 918 SUPERFAMILY SET domain 775 914 IPR046341 -
Vimu6g02111 918 SUPERFAMILY FYVE/PHD zinc finger 354 416 IPR011011 -
Vimu6g02111 918 Pfam PWWP domain 187 283 IPR000313 -
Vimu6g02111 918 Pfam PHD-finger 357 410 IPR019787 -
Vimu6g02111 918 ProSiteProfiles Post-SET domain profile. 902 918 IPR003616 -
Vimu6g02111 918 Pfam PHD-zinc-finger like domain 572 627 - -
Vimu6g02111 918 CDD SET_SETD1-like 765 914 - -
Vimu6g02111 918 MobiDBLite consensus disorder prediction 1 67 - -
Vimu6g02111 918 ProSiteProfiles PWWP domain profile. 186 255 IPR000313 -
Vimu6g02111 918 Gene3D - 178 285 - -
Vimu6g02111 918 SUPERFAMILY Tudor/PWWP/MBT 183 285 - -
Vimu6g02111 918 ProSiteProfiles Extended PHD (ePHD) domain profile. 570 628 IPR034732 -
Vimu6g02111 918 ProSiteProfiles Zinc finger PHD-type profile. 355 411 IPR019787 -
Vimu6g02111 918 SMART set_7 776 899 IPR001214 GO:0005515
Vimu6g02111 918 Gene3D SET domain 761 918 IPR046341 -
Vimu6g02111 918 Pfam PHD-finger 538 565 - -
Vimu6g02111 918 FunFam Histone-lysine N-methyltransferase 752 918 - -
Vimu6g02111 918 CDD PWWP_AtATX3-like 187 286 - -
Vimu6g02111 918 MobiDBLite consensus disorder prediction 37 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02111 Vimu-Chr6 18737325 18746602 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02111 321 382 EF-hand Containing Proteins AT5G28340 59.677 1.24e-17 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vimu6g02111 SET 1.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02111 - - gmx:100793624 999.193