Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02110 ATGGATCACTTTACAAAATCTCTGTGGGTGTTGGCTCTATGCGTAGCTGTAATGGCACAGCAGGCAGCTGCAGTGGACCAATCGAAAGGAAAGGAAACACCAAAAGGAAAGACTCTGATCAACAAGGTATGCTCAGCGTCCCCAACCAAAGACCTCTGCGTTCAGGTCCTCTCTTCTGATGCACTAAGCACCACCGCAAGCCTCAAAGAATTGGCAATCATTTCCCTGAGGGTTGCTGCCAGAAACGCTTCCGGCATCCTCGCCGACACCAAAGTTCTCATCGATGACGACGAACTTGACCCTGATATCCAACAAGGTTTGGCTGATTGCAAGGAGAACATCCTGGACGCAGAAAGCCAGCTGGAGGACACCATTGCTGCCTTGATGGTCAATTCTGAAGGTGACGCTCAGCTTTGGCTCAAGGCTGCCTTGGCTGCCATCGACACCTGCGATGCCTCCATCCCCGGAGACGACGACATTCTCTCTGTTGAAAGCGCCGTCTTCCGCAAGCTCTGCAACATCGCCAACTCCGTCATCAAGCAACTCCCTAATTCAACCAAATCTTAA 567 0.515 MDHFTKSLWVLALCVAVMAQQAAAVDQSKGKETPKGKTLINKVCSASPTKDLCVQVLSSDALSTTASLKELAIISLRVAARNASGILADTKVLIDDDELDPDIQQGLADCKENILDAESQLEDTIAALMVNSEGDAQLWLKAALAAIDTCDASIPGDDDILSVESAVFRKLCNIANSVIKQLPNSTKS 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02110 188 Coils Coil 107 127 - -
Vimu6g02110 188 PANTHER PECTINESTERASE INHIBITOR-LIKE 11 175 - -
Vimu6g02110 188 SMART PMEI_2 35 178 IPR006501 GO:0004857
Vimu6g02110 188 Pfam Plant invertase/pectin methylesterase inhibitor 39 175 IPR006501 GO:0004857
Vimu6g02110 188 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 182 IPR035513 -
Vimu6g02110 188 Gene3D Invertase/pectin methylesterase inhibitor family protein 35 182 IPR035513 -
Vimu6g02110 188 NCBIfam pectinesterase inhibitor domain 9 182 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02110 Vimu-Chr6 18736077 18736643 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02110 4 150 Carbohydrate Esterase AT5G53370 26.797 8.96e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02110 - - gmx:100785595 223.787