Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02108 ATGGCTATGGCTTTTAACAGCTTGTACGCTCTCACACTCTTTGTTTCCCTTCTGCTATCCTTCTTCATGTCGATTTCCATAGCTGATAATAGCCATGCAGTTGTTCCACCAGAAACCCTATGCCACTCAACCTTGGACCCTTCTTACTGCAAATTTGTTCTTGCTAATCAAAATGGTAGCATATATGACTATTGTCAAATTTCTGTTCGAAAATCCCTGTCCCAGTCTCGTAAGTTCTTGAACACGATGTACTCATATCTTCAAAATCCCTCCTCTCTCTCCCAACCAACAATCCTTGCTCTTCAAGATTGCCAATTACTTTCTGAACTAAACTTTGAATACTTATCAAAGACACTTGACACTGTCGATAAAGCTAAGGATGTTCTTCCCACCTCTCAAGAAGACGATGTTCACACATTGCTTAGTGCTGTTTTGACAAATTACCAAACTTGTTTAGATGGTCTTCAAACCTCAGCTTCAGATCCAAGAGTGAAGAATGGTCTTCTTTCCCAACTCTTGGATGATATGAAGCTTAACAGTGTCTCACTTTATCTGTTCACCAAGGCTTGGGTTCCTGAAAACAGAATATGGAAACCCCATGGAGCCATCCAGAACGATGGTTTACCCTTGAAGATGTCAAACAAAGTTCGTGCGATTTATGATTCTGCGAAAGTTCAAGGGAGAAAACTGCTACAAACATCGGATGACAGTGAAAGCGTTTTGGTGAGTGATATTGTGGTGGTTAGTAAAGATGGAAGCGGAAACTTTACCACCATAAACGATGCCATAGCTGCTGCACCAAATAACACAGCTGTTACGGATGGCTACTTCATTATTATTATCAGTGAGGGTATATATCAAGAGTATGTATCTATAGCAAAAAACAAGAAGTTCTTGATGTTAATTGGAGATGGAATCAACCGGACAATTATAACTGGCGATCACAATGTTGTTGATGGCTTTACAACATTCAACTCAGCCACATTTGCTGTGGTAGGACAAGGATTCGTAGGTGTGAACATAACATTCCGCAACACTGCTGGGGCAAGCAAGCACCAAGCAGTTGCAGTAAGAAATGGAGCAGATATGTCCACCTTCTATAGCTGTAGTTTTGAAGGGTATCAAGACACTTTATACACTCATTCCCTGAGACAGTTTTATCGAGAATGTGACATATATGGCACAGTTGACTTCATATTTGGAAACGCAGCTGTTGTTTTGCAAAACTGCAACATGTATCCCCGCCTTCCGTTGAGTGGACAATTCAATGCCATAACTGCACAAGGTCGAACTGATCCAAATCAAAACACCGGCATTTCCATACAAAATGCCACTATAAAAGCAGCACAGGATTTGGCTCCAACGGTTGGTACTGTGGAAACATACCTTGGAAGGCCATGGAAGGAGTACTCAAGAACTGTTTATATACAGTCTTTCATGGATAGTTTGATAGCTCCTGCTGGTTGGCATGAATGGGATGGGAGTTTCGGACTCAGCACATTGTACTACGCAGAATATGATAACACGGGTCCTGGTTCAAACACTGCAAACCGAGTAAACTGGTCTGGGTTTCATGTTATCGATGCCAATGATGCGGTAAATTTTACTGTCTCTAGCTTCTTGGATGGGGATGATTGGGTGCCTCGAACCAGCATTCCGTACCAGACATCTTTGAGTTTAATTATTGAGATTCCGCGTTGCAAAGGAAAAGACACCGTTTCAAATCCTGCAACTCCTGTCTCCCCTGGAACCGCATGCCAATCCACCCCAGACCCATCTTACTGCAAATCCGTTCTCCCTCCCCAAAACGGCAACGTGTACGACTATGGCCGCTTCTCAGTCAAAAAATCACTATCGCAGGCTCGAAAGTTCTTGAGCCTCGTCGATAAATACCTCCAGCGTCCTTCTTCTCTTTCCGCCACCGCAATCCGTGCGCTGCAAGATTGTCGTACTCTCGGGGAACTCAACTTCGATTTCCTTTCCAGTTCCTTCCAAACCGTCAACAAGACAACCAGGTTTCTCCCTAGTTTTCAAGCCGACGACATCCAAACCTTACTCAGCGCCATTCTCACCAACCAGCAAACATGCTTCGACGGTCTCAAAGACACTGCTTCCGCTTGGAGCGTCAGAAACGGTCTCACACTCCCTCTTTCCAACGACACCAAACTCTACAGTGTCTCGCTCGCTCTCTTCACCAAGGGTTGGGTTCCCAGATCCAAAGTCAACACGATGCACCCTACCAAGAAACAACAAGGCTTCCGAAACGGGCGTTTGCCGCTTAAGATGTCCAGCACAACCCGTGCAATCTACGAGTCTGTGAGTAGGAGGAAGCTCCTTCAGGCCTCGGTGGGTCAGGCTGTTGTGGTGAGAGATATCGTCACGGTTAGCCAAGATGGAAGCGGGAACTTCACCACCATCAGTGATGCCATTGCTGCCTCTCCTAACAAATCTGCCTCTACCGATGGATACTTCCTTATCTATGTCACTGCTGGTGTGTATGACGAAATTGTGTCCATTGATAAGAAGAAGACCTACTTGATGATGGTCGGTGATGGTATCAACAAGACAATTATCACCGGCAATCGTAGTGTAGTAGATGGCTGGACAACCTTCAGTTCCGCAACATTAGCTGTGGTAGGGCAAGGATTCGTGGGTGTGAATATGACCATCCGCAACACCGCCGGAGCCGTGAAGCACCAAGCGGTGGCCCTTCGAAACGGAGCAGATTTGTCCACGTTTTACAGCTGCAGCTTCGAGGGGTACCAAGACACATTGTACGTTCATTCGCTGAGGCAATTCTACAGGGAGTGCGACATCTACGGCACCGTAGATTTCATATTCGGAAACGCTAAGGTGGTATTACAAAGTTGCAACATGTATCCTCGTCTCCCCATGCAGGGTCAATTCAACGCCATCACTGCACAAGGAAGAACAGATCCAAACCAAGACACTGGAATTTCTATCCACAACTGTAGCATTAGAGCAGCTGACGATTTAGCTTCTAGCAGCGGTGTTTCAACATATTTGGGAAGGCCATGGAAGGAATATTCTAGAACTGTTTATATGCAAACTTTTATGGATGATTTGATCAACGGTGCAGGCTGGCGTGCATGGGACGGTGATTTTGCATTAAGCACTTTGTATTACGCAGAGTACAGCAACAGTGGACCAGGGTCTAACACCGGCAATAGAGTGACGTGGTCTGGTTATCACGTGATTAATGCCACTGATGCAGCTAATTTTACAGTGTCGAATTTTTTGCTTGGTGATGATTGGTTACCCCAGACAGGAGTGTCGTACACCGATTACCTGATATAG 3318 0.4527 MAMAFNSLYALTLFVSLLLSFFMSISIADNSHAVVPPETLCHSTLDPSYCKFVLANQNGSIYDYCQISVRKSLSQSRKFLNTMYSYLQNPSSLSQPTILALQDCQLLSELNFEYLSKTLDTVDKAKDVLPTSQEDDVHTLLSAVLTNYQTCLDGLQTSASDPRVKNGLLSQLLDDMKLNSVSLYLFTKAWVPENRIWKPHGAIQNDGLPLKMSNKVRAIYDSAKVQGRKLLQTSDDSESVLVSDIVVVSKDGSGNFTTINDAIAAAPNNTAVTDGYFIIIISEGIYQEYVSIAKNKKFLMLIGDGINRTIITGDHNVVDGFTTFNSATFAVVGQGFVGVNITFRNTAGASKHQAVAVRNGADMSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNMYPRLPLSGQFNAITAQGRTDPNQNTGISIQNATIKAAQDLAPTVGTVETYLGRPWKEYSRTVYIQSFMDSLIAPAGWHEWDGSFGLSTLYYAEYDNTGPGSNTANRVNWSGFHVIDANDAVNFTVSSFLDGDDWVPRTSIPYQTSLSLIIEIPRCKGKDTVSNPATPVSPGTACQSTPDPSYCKSVLPPQNGNVYDYGRFSVKKSLSQARKFLSLVDKYLQRPSSLSATAIRALQDCRTLGELNFDFLSSSFQTVNKTTRFLPSFQADDIQTLLSAILTNQQTCFDGLKDTASAWSVRNGLTLPLSNDTKLYSVSLALFTKGWVPRSKVNTMHPTKKQQGFRNGRLPLKMSSTTRAIYESVSRRKLLQASVGQAVVVRDIVTVSQDGSGNFTTISDAIAASPNKSASTDGYFLIYVTAGVYDEIVSIDKKKTYLMMVGDGINKTIITGNRSVVDGWTTFSSATLAVVGQGFVGVNMTIRNTAGAVKHQAVALRNGADLSTFYSCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAKVVLQSCNMYPRLPMQGQFNAITAQGRTDPNQDTGISIHNCSIRAADDLASSSGVSTYLGRPWKEYSRTVYMQTFMDDLINGAGWRAWDGDFALSTLYYAEYSNSGPGSNTGNRVTWSGYHVINATDAANFTVSNFLLGDDWLPQTGVSYTDYLI 1105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02108 1105 SUPERFAMILY Pectin lyase-like 242 554 IPR011050 -
Vimu6g02108 1105 SMART complete 828 1008 IPR006633 -
Vimu6g02108 1105 SMART complete 281 442 IPR006633 -
Vimu6g02108 1105 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 584 733 IPR035513 -
Vimu6g02108 1105 CDD PMEI-like_3 584 735 - -
Vimu6g02108 1105 ProSitePatterns Pectinesterase signature 2. 939 948 IPR033131 -
Vimu6g02108 1105 FunFam Pectinesterase 38 188 - -
Vimu6g02108 1105 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 188 IPR035513 -
Vimu6g02108 1105 FunFam Pectinesterase 786 1104 - -
Vimu6g02108 1105 Pfam Plant invertase/pectin methylesterase inhibitor 584 730 IPR006501 GO:0004857
Vimu6g02108 1105 Pfam Plant invertase/pectin methylesterase inhibitor 38 167 IPR006501 GO:0004857
Vimu6g02108 1105 CDD PMEI-like_3 39 190 - -
Vimu6g02108 1105 Gene3D - 787 1104 IPR012334 -
Vimu6g02108 1105 Gene3D - 240 558 IPR012334 -
Vimu6g02108 1105 Gene3D Invertase/pectin methylesterase inhibitor family protein 583 733 IPR035513 -
Vimu6g02108 1105 SMART PMEI_2 32 185 IPR006501 GO:0004857
Vimu6g02108 1105 SMART PMEI_2 577 730 IPR006501 GO:0004857
Vimu6g02108 1105 Pfam Pectinesterase 793 1090 IPR000070 GO:0030599|GO:0042545
Vimu6g02108 1105 Pfam Pectinesterase 246 544 IPR000070 GO:0030599|GO:0042545
Vimu6g02108 1105 ProSitePatterns Pectinesterase signature 2. 392 401 IPR033131 -
Vimu6g02108 1105 FunFam Pectinesterase 239 558 - -
Vimu6g02108 1105 SUPERFAMILY Pectin lyase-like 788 1101 IPR011050 -
Vimu6g02108 1105 FunFam Pectinesterase 583 733 - -
Vimu6g02108 1105 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 39 188 IPR035513 -
Vimu6g02108 1105 PANTHER PECTINESTERASE 24 550 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02108 Vimu-Chr6 18722059 18730235 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02108 8 558 Carbohydrate Esterase AT4G02330 55.769 0.0 635
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02108 K01051 - gmx:100800971 997.267