Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02107 ATGGCTTTTAAGAACTTGTCCCTTCTTACGATCTGTCTTTCTCTTGTGTTATCCTCCTTGTCACCGATTTCCATAGCTTCTAATAATAAACGTGATGTTGTTCCACCAGAAACCTTGTGCAAATCCACCGTATATCCTTCCTACTGCAAAACCCTGCTTGCTAATCAAAACGGCACAATCTTTGACTATGGTCGAATTTCTGTCCGAAAGTCCTTGTCCCAGTCCCGCAAATTCTTAAACCTCGTAAACTCATTCCTCCAAGACAGATCCTCTTTCTCTCTTCCCACAACTCGCGCCCTTGAAGACTGTCAATTCCTCGCTCAACAAAACTTCGAATACTTATCAAACGCACTCGACAATGTTGGTAAAGCCAGCGATGATCTTCCCACCACTGAAGCTGAAGACCAGCAAACCATGCTCAGTGCTGCTTTGACAAACCAAGAAACTTGTTTAGAAGGTTTACAGACCACAGCTTCTGATGAAAGAGTGAAGAGTGAACTTCTCTCATCACTCTCTGATGACACGAAGCTTCACAGTGTTTCCCTTGATTTGTTCATCAAGGGTTGGGTGCCTGAGAAGAAAATCTCAACGTCATGGCAACCCAATGGAAGACACTTGGGTTTCCGCAACGGTCGTTTACCATTGAGGATGTCTAACCGTGTACGTGCCATCTATGATTCTGCTAGAGGTCACGGCAGAAAACTGCTTCAAGATAGCAGCGACAGTGTACTGGTCAATGATATTGTGGTTGTTAGTCAGGACGGAAGCGGGAACTTCACTACCATCAACGATGCTATAGCAGCTGCGCCAAATAACTCTGCTTCTAGTGATGGTTACTTTTTAATTTTTGTCACTGGAGGTGTGTACCAAGAGTACGTATCCATAGCCAAAAACAAAAAGTACTTGATGATGGTTGGAGATGGGATCAATCAAACGATTATCACCGGTGATCACAACGTTGTCGATAACTTCACAACATTCAACTCAGCAACATTTGGTGAGCAAATTAAATATACACATATCTTTTAA 1029 0.4305 MAFKNLSLLTICLSLVLSSLSPISIASNNKRDVVPPETLCKSTVYPSYCKTLLANQNGTIFDYGRISVRKSLSQSRKFLNLVNSFLQDRSSFSLPTTRALEDCQFLAQQNFEYLSNALDNVGKASDDLPTTEAEDQQTMLSAALTNQETCLEGLQTTASDERVKSELLSSLSDDTKLHSVSLDLFIKGWVPEKKISTSWQPNGRHLGFRNGRLPLRMSNRVRAIYDSARGHGRKLLQDSSDSVLVNDIVVVSQDGSGNFTTINDAIAAAPNNSASSDGYFLIFVTGGVYQEYVSIAKNKKYLMMVGDGINQTIITGDHNVVDNFTTFNSATFGEQIKYTHIF 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02107 342 Gene3D - 243 340 IPR012334 -
Vimu6g02107 342 SMART PMEI_2 31 184 IPR006501 GO:0004857
Vimu6g02107 342 SUPERFAMILY Pectin lyase-like 246 332 IPR011050 -
Vimu6g02107 342 FunFam Pectinesterase 37 187 - -
Vimu6g02107 342 NCBIfam pectinesterase inhibitor domain 6 180 IPR006501 GO:0004857
Vimu6g02107 342 PANTHER PECTINESTERASE 23 333 - -
Vimu6g02107 342 Pfam Pectinesterase 249 334 IPR000070 GO:0030599|GO:0042545
Vimu6g02107 342 Pfam Plant invertase/pectin methylesterase inhibitor 37 183 IPR006501 GO:0004857
Vimu6g02107 342 CDD PMEI-like_3 38 189 - -
Vimu6g02107 342 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 187 IPR035513 -
Vimu6g02107 342 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 185 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02107 Vimu-Chr6 18717807 18718835 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02107 38 333 Carbohydrate Esterase AT1G02810 48.758 2.54e-92 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02107 K01051 - gmx:100813051 505.753