Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02105 ATGCCAGCAACCACCCACCCTATTTATCCACAGAATTTCTACCACTGCTATCACTTTTCTTTCTTCTTCTTCTTCTTCTTCTTTATCAGTACAAAAATGCTACCTCACATACCCTGCATTCTCTCTGCGCTTCATGTTATACTCCTTTTTTCAGCAACCCAATTCAGCATCACCGCAGAAGCAACGAGAGCCCTCGAACAAACCCAGCTCCATTTCCATGTAGCAAACTCCACATGCCAGGGAACACTCTACCCGGACCTCTGCGTCTCAACCCTTACCTCTTTCCCAGATCTCACCTCAAAAACCTTACCACAAATGATATGTTCTGTCGTGAACCACACCATATACGAGGTCACATTGTCCTCCTCCAACTGCAGCGGTCTCCGAAAGAAGCTCCCCAATCTCAACAAACTCGAACAGCGAGCTCTCGACGACTGCCTCGACCTCTTCGACGAAACCGTGGAGGAGCTCAAAACCACCGTGGCGGATCTCTCCCAAGGCACAATAGGGCCGAAGCGTTACCACGACTCTCAGACTTTCTTAAGCGGCGCCATGACCAACCTGTACACGTGTCTGGATGGCTTTGCGTACAGCAAAGGGCATGTGAGGGAGAAGATTGAAGAGGGGCTGTTGGAGATTTCGCATCTCGTAAGCAACTCGTTGGCCATGCTGAAGAAAGTGCCCGAAAAGAAGAAACAGTCGAAAAACGAGATTTTTCCGGAATATGGAAAGATGAAAGACGGGTTCCCGTCGTGGGTTACCCCTAAAGACCGGAAGTTGCTTCAAGCTCCGGTGAATGAAACGAAGTTCGACCTTGTTGTGGCCAAAGATGGCAGTGGCAACTTCACCACTATAGGTGAAGCAGTGGCTGCAGCTCCAAACTCCAGCGCGACCAGGCAAGTATACTACAACCTTATCCATCACGTTATCACCTTCAGTTTTTTTTTTTTTTTTTTGAACGTGGAGGTAATAAGGAAGAAGACCAATCTGATGTGGGTGGGAGATGGAATTGGAAAGACTGTTGTGAAGGCAAGCAGGAACGTCGTTGATGGCTGGACTACTTTCCAATCTGCCACTGTCGCTGTGGTTGGAAACGGATTCATAGCAAAAGGTGTAACCTTTGAGAACTCAGCTGGGCCCAGCAAACACCAAGCTGTGGCTCTAAGAAGCGGTGCTGATTTCTCAGCCTTCTACCAGTGCAGCTTTGTTGCGTACCAAGACACGCTCTATGTCCACTCTCTGCGTCAATTCTACCGCGAATGCGACGTTTATGGAACCGTGGACTTCATCTTTGGTAATGCAGCGGCGGTGCTCCAGAACTGCAACTTGTACGCAAGAAAGCCTAATCCAAACCAGAGGAACCTGTTCACTGCACAAGGCAGAGAAGACCCTAATCAAAACACGGGCATTTCCATCATAAACTGCAAGGTTGCAGCAGCTGCTGATTTGATCCCTGTGAAATCTGAGTTCAGGAATTACTTGGGTCGTCCCTGGAAGATGTATTCGAGGACTGTTTTTCTGAATTCTTTGATGGAGGATCTGATAGAGCCTGCAGGGTGGTTGGAATGGAATGGGACGTTTGCATTGGATACTTTGTATTATGGAGAGTACAACAATAGAGGTCCTGGTGCAAATACAAGTGGCAGAGTTACGTGGCCTGGTTATAGGGTCATCACCAACTCCACTGAGGCAAACCAGTTCACAGTTGCAAATTTCATTCAAGCCAATGAATGGTTGAACTCTTATGGCATTCCATTCTTCTCTGGCTTGACTTGA 1776 0.4786 MPATTHPIYPQNFYHCYHFSFFFFFFFFISTKMLPHIPCILSALHVILLFSATQFSITAEATRALEQTQLHFHVANSTCQGTLYPDLCVSTLTSFPDLTSKTLPQMICSVVNHTIYEVTLSSSNCSGLRKKLPNLNKLEQRALDDCLDLFDETVEELKTTVADLSQGTIGPKRYHDSQTFLSGAMTNLYTCLDGFAYSKGHVREKIEEGLLEISHLVSNSLAMLKKVPEKKKQSKNEIFPEYGKMKDGFPSWVTPKDRKLLQAPVNETKFDLVVAKDGSGNFTTIGEAVAAAPNSSATRQVYYNLIHHVITFSFFFFFLNVEVIRKKTNLMWVGDGIGKTVVKASRNVVDGWTTFQSATVAVVGNGFIAKGVTFENSAGPSKHQAVALRSGADFSAFYQCSFVAYQDTLYVHSLRQFYRECDVYGTVDFIFGNAAAVLQNCNLYARKPNPNQRNLFTAQGREDPNQNTGISIINCKVAAAADLIPVKSEFRNYLGRPWKMYSRTVFLNSLMEDLIEPAGWLEWNGTFALDTLYYGEYNNRGPGANTSGRVTWPGYRVITNSTEANQFTVANFIQANEWLNSYGIPFFSGLT 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02105 591 CDD PMEI-like_3 77 228 - -
Vimu6g02105 591 PANTHER PECTINESTERASE 53 580 - -
Vimu6g02105 591 ProSitePatterns Pectinesterase signature 2. 423 432 IPR033131 -
Vimu6g02105 591 Pfam Pectinesterase 271 576 IPR000070 GO:0030599|GO:0042545
Vimu6g02105 591 SUPERFAMILY Pectin lyase-like 269 589 IPR011050 -
Vimu6g02105 591 NCBIfam pectinesterase inhibitor domain 45 226 IPR006501 GO:0004857
Vimu6g02105 591 Gene3D Invertase/pectin methylesterase inhibitor family protein 74 228 IPR035513 -
Vimu6g02105 591 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 76 227 IPR035513 -
Vimu6g02105 591 SMART PMEI_2 70 223 IPR006501 GO:0004857
Vimu6g02105 591 Gene3D - 265 590 IPR012334 -
Vimu6g02105 591 Pfam Plant invertase/pectin methylesterase inhibitor 76 223 IPR006501 GO:0004857
Vimu6g02105 591 FunFam Pectinesterase 265 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02105 Vimu-Chr6 18703374 18706531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02105 100 590 Carbohydrate Esterase AT4G02300 53.200 0.0 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02105 K01051 - gmx:100813592 926.391