Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02095 ATGTCAAACGATGCCGTTTGCTTCTATTCGGTGCTTGGGATTGGCAAACATTCCAGCGATGGTGAAATTCGATGCGCTTATCGTAGGATGGCTCTGAAGTGGCATCCTGATAGATGTAGCAAGGACCCAAAGTTTGCACTGGAGGCAAAAAAACAGTTTCAGCACGTTCAAGAGGCTTATTCAGTTTTGTCCAACACAGGGAAGAGAAGGATATATGATGCTGGTTTGTTTGGTCTAATTGGAGAGGACGATGACGAGGGGTTTGTTGATTTCATGCAAGAAATGGTTTTGATGATGCAGAACGTAAGACCCAAGGATGAGAAAGGAACAATGGAGGATCTACAAGGACTGTTAAGGGATATGATGATGAAAGAAAATGAAGGAATAGGGAAGGCTGGGTTTTGCTGTAATTCATCTCCATGTCCTACAAAGAAGACACGTATTTCATGA 450 0.4289 MSNDAVCFYSVLGIGKHSSDGEIRCAYRRMALKWHPDRCSKDPKFALEAKKQFQHVQEAYSVLSNTGKRRIYDAGLFGLIGEDDDEGFVDFMQEMVLMMQNVRPKDEKGTMEDLQGLLRDMMMKENEGIGKAGFCCNSSPCPTKKTRIS 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02095 149 Gene3D DnaJ domain 1 86 IPR036869 -
Vimu6g02095 149 PANTHER PUTATIVE, EXPRESSED-RELATED 4 130 - -
Vimu6g02095 149 Pfam DnaJ domain 8 73 IPR001623 -
Vimu6g02095 149 SMART dnaj_3 6 68 IPR001623 -
Vimu6g02095 149 CDD DnaJ 7 65 IPR001623 -
Vimu6g02095 149 SUPERFAMILY Chaperone J-domain 5 96 IPR036869 -
Vimu6g02095 149 ProSitePatterns Nt-dnaJ domain signature. 53 72 IPR018253 -
Vimu6g02095 149 PRINTS DnaJ domain signature 48 68 IPR001623 -
Vimu6g02095 149 PRINTS DnaJ domain signature 27 42 IPR001623 -
Vimu6g02095 149 PRINTS DnaJ domain signature 9 27 IPR001623 -
Vimu6g02095 149 ProSiteProfiles dnaJ domain profile. 7 76 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02095 Vimu-Chr6 18637355 18638245 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02095 7 74 C2H2 Transcription Factor Family AT1G74250 49.275 6.63e-14 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02095 - - pvu:PHAVU_001G210400g 269.24