Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02088 ATGCCATTGATTGCTTTGCTGCCCTTGACTATTAATACATTGGAGATTCAAAGTAGTTCTCAAAAAGGACTCAGCGTTCCAGATGCCAGCCTTGTCCCTTTATCATCAACTATTGATGTTATTGAACTAATGAACCTTGGTCAAAGGAACCGTGCAGTTGGAGCAACAGCTCTTAATGACCGCAGTAGCCGATCTCATAGGTATGCTAACAATTGTATTTTTCCAAAATATCAATTTGGCAATTGCTTGACTATTCATGTTCAAGGAAGTGATTTGACATCTGCAGCTATCCTTCGTGGATGCATGCATTTGGTTGACTTGGCAGGAAGTGAGAGGAGGCACAACATATTTAACAAATCTCTTTCAGCTCTGGGAGATGTCATTGCTCCCTTTCTCAGAGAAACACGCATGTACCTTACAGAAACAAAACACAATTGGTTTGAATTCTCTGATAATTTTGGTTTGATTGTTTCAGGAGGACAGGCAAAGACACTAATGTTTGTTCACATAAGTTCAGAGAGTGATGCTATTGGAGAAACAATTAGTACCTTAAATATTGCTGAAAGAGTTGCCACAGTTGAACTCGATGGTGCTAGAGTAAACAAAGACAGTTCAGATATTAAAGAGCTCAAAAAACAGTTGGATGGTCAACTCTAA 657 0.3912 MPLIALLPLTINTLEIQSSSQKGLSVPDASLVPLSSTIDVIELMNLGQRNRAVGATALNDRSSRSHRYANNCIFPKYQFGNCLTIHVQGSDLTSAAILRGCMHLVDLAGSERRHNIFNKSLSALGDVIAPFLRETRMYLTETKHNWFEFSDNFGLIVSGGQAKTLMFVHISSESDAIGETISTLNIAERVATVELDGARVNKDSSDIKELKKQLDGQL 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02088 218 PRINTS Kinesin heavy chain signature 56 73 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vimu6g02088 218 PRINTS Kinesin heavy chain signature 101 119 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vimu6g02088 218 SMART kinesin_4 1 201 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vimu6g02088 218 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 214 IPR027417 -
Vimu6g02088 218 Pfam Kinesin motor domain 12 192 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vimu6g02088 218 Gene3D Kinesin motor domain 6 217 IPR036961 -
Vimu6g02088 218 PANTHER KINESIN-LIKE PROTEIN KLP-3 159 212 IPR027640 GO:0003777|GO:0007018
Vimu6g02088 218 ProSiteProfiles Kinesin motor domain profile. 1 193 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02088 Vimu-Chr6 18581589 18582410 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02088 6 199 Calmodulin-binding Proteins AT5G65930 31.579 4.83e-17 77.4