Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02081 ATGGCGACGAGAAATCGAACAGTGGAGTTTAGGAAGCACAGAGACGCCGTGAAGAGCGTGCGTGCTCCTCTCTCTTCCTCCGCCGCATCTGCTTCTTCCACCGGTCCCGTCATTGAAATGGTTTCGCTTCTTCCTTCCAATCGATCATCCTATGCTCCTTTAAGCACCGAGGACCCATCCACCTCTAGGGATGCGGTTACTGTGGGGTTGCCGCCGTCTTGGGTGGATGATTCTGAAGAAATAGCTGCGGCTATACAACGTGCTCGGGTTAAAATTTCTGAGTTAACTAAAGCTCATTCGAAGGCTTTGTTGCCTTCCTTTGGGGATGGAAAAGAGGTCCAGCGTCTTATCGAGACTCTCACCCAGGAAATTACATCTCTTCTTAGAAAATCTGAAGTGAGGCTGAAAAGACTTTCTGCTGCTAGCGGATCTTCCGAGGATTCTAGTGTTAGAAAAAATGTACAGCGTTCCCTTGCTATAGACCTTCAGAACCTATCAATGGATCTTCGGCGAAAGCAGTCAGCATACTTGAAACGTCTGCAACAGCAAAAAGAGGGTTTTGACGGGGTTGACTTGGAGATGAACTTTAACGGGAGTAAATTTGGATCACGTGATGATGAATTCAGTGATGTGGGTTTTAGTGAAGAGCAGATGACAAAGCTAAAGAAAAGTGAGCAGTTCTCAGTGGAAAGGGAGAGAGAGATTGAACAGGTTGTTAAATCAGTCCATGAACTTGCTCAAATCATGAAGGATCTCTCTGTCCTAGTGATAGACCAGGGAACAATTGTGGATAGAATTGACTATAACATTCAGAGTGTTTCTACGTCCGTTGAAGAGGGCCTCAAGCAGTTGCAAAAGGCAGAGAGAACACAGAAAAAAGGAGGGATGATTATGTGTGCAACATCACTTGTTATAATGTGCTTTATCATGCTAGTTCTCTTGATACTCAAAGAGATCCTCTTCTAG 966 0.4513 MATRNRTVEFRKHRDAVKSVRAPLSSSAASASSTGPVIEMVSLLPSNRSSYAPLSTEDPSTSRDAVTVGLPPSWVDDSEEIAAAIQRARVKISELTKAHSKALLPSFGDGKEVQRLIETLTQEITSLLRKSEVRLKRLSAASGSSEDSSVRKNVQRSLAIDLQNLSMDLRRKQSAYLKRLQQQKEGFDGVDLEMNFNGSKFGSRDDEFSDVGFSEEQMTKLKKSEQFSVEREREIEQVVKSVHELAQIMKDLSVLVIDQGTIVDRIDYNIQSVSTSVEEGLKQLQKAERTQKKGGMIMCATSLVIMCFIMLVLLILKEILF 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02081 321 PANTHER SYNTAXIN 76 308 IPR045242 -
Vimu6g02081 321 CDD SNARE_syntaxin16 230 286 - -
Vimu6g02081 321 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 225 287 IPR000727 -
Vimu6g02081 321 SMART SynN_4 65 181 IPR006011 GO:0016020
Vimu6g02081 321 ProSitePatterns Syntaxin / epimorphin family signature. 231 270 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vimu6g02081 321 SMART tSNARE_6 220 287 IPR000727 -
Vimu6g02081 321 Gene3D - 71 279 - -
Vimu6g02081 321 FunFam Syntaxin-43 71 279 - -
Vimu6g02081 321 Pfam SNARE domain 261 313 IPR000727 -
Vimu6g02081 321 SUPERFAMILY t-snare proteins 70 280 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02081 Vimu-Chr6 18543570 18548828 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02081 1 310 SNARE and Associated Proteins AT3G05710 68.210 3.77e-155 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02081 K08489 - gmx:100803629 526.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02081 6 18543570 18548828 Vimu6g02081 6 18543570 18548828 ECH
Vimu6g02081 6 18543570 18548828 Vimu3g02040 3 35294399 35299382 ECH