Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02074 ATGTCTGATAATCACAAGACTCAGAGTTCGGCAGCACCGAAACTGTTTGGTTTCCCACTAACAGAGCAAGAGGAATTTGCAGAAAGGAAATACGATGTTGGAGAGGACAGAAAATTCAGGTGCCACTACTGCAACAGAGTTTTCGCAAACTCTCAGGCCTTAGGGGGCCACCAAAACGCTCACAAGAAAGAGCGTCAGAGAGCCAGGCGATTCCAAATCCACAACCACAGACGCTCCTCCATGCCACCACCATCATCTTCATCTCTTTCTGTTAAGCCTTTTACCTTTCTCACCTCCCATGCAATAATATCATCACTACCACTTTCAGTTACACTGCCTCCCATTTACCTTTCATCTCCTTCTCCTTCTACTTCCACCTCTGCAAAGCACTTCCCCTCACGCCCCGTTTTCGTTCCTTCCTCCACCCACCTCACTGCTAATGCTACTGTTACCACTTCATGTTTTCCTCTTCAGCTTTATGCCTCACCTTCTGTGCTGCAATCTGCTTCTACTGTCCTTGATTTTGCAGCAGACAGGGAAGTTGATGTCCATCTCAAATTGTAG 564 0.4699 MSDNHKTQSSAAPKLFGFPLTEQEEFAERKYDVGEDRKFRCHYCNRVFANSQALGGHQNAHKKERQRARRFQIHNHRRSSMPPPSSSSLSVKPFTFLTSHAIISSLPLSVTLPPIYLSSPSPSTSTSAKHFPSRPVFVPSSTHLTANATVTTSCFPLQLYASPSVLQSASTVLDFAADREVDVHLKL 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02074 187 Gene3D Classic Zinc Finger 22 89 - -
Vimu6g02074 187 FunFam Zinc finger protein 6 27 92 - -
Vimu6g02074 187 PANTHER ZINC FINGER PROTEIN 5 6 187 IPR044299 GO:0010090
Vimu6g02074 187 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
Vimu6g02074 187 Pfam C2H2-type zinc finger 39 64 - -
Vimu6g02074 187 SUPERFAMILY beta-beta-alpha zinc fingers 36 66 IPR036236 -
Vimu6g02074 187 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 66 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02074 Vimu-Chr6 18508528 18509091 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02074 14 74 C2H2 Transcription Factor Family AT5G06650 46.479 1.78e-15 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu6g02074 zf-C2H2_6 9.2e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02074 - - gmx:100806818 206.068