Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02071 ATGGGAAGGGCTCCTTGTTGTGAGAAGGTGGGGATGAAGAAGGGGAGGTGGACAGCGGAGGAGGATGAGATTTTGACCAAGTACATTCAGGCTAATGGAGAAGGTTCTTGGAGGACGTTGCCAAAAAATGCAGGATTGTTAAGATGTGGGAAGAGTTGCAGGTTAAGGTGGATTAACTATTTGAGAGCTGATCTGAAGAGAGGAGACATTTCTGTCGAGGAAGAAAATACCATTGTCAAGTTGCATGCTTCCTTAGGCAACAGGTGGTCTTTGATAGCAAGTCACTTGCCAGGAAGAACGGACAACGAGATTAAAAATTACTGGAACTCTCACTTAAGCAGAAAAGTTTACATTTTCCGAAGCAAAAATACTACCAAACCAGACATCATCACTTTCACTCTACCTCCCAAGAGGAAACGTGGTAGGACAAGTCGCTGGGCGATGAAGAAGAACAAGACATATTGTGCCCCAAAACAAAAGCAACCGCTCTTACCAGCAGTTCCTCTTCCACCAACACCGCCACTTGAGACCGAGAAACATTCATCCACCCATGAGAATACTACTACTCAAGAAGAAGAAAACATAGGCACTAAAGCCATATGGATTGAGGGTGAGAAAGAAATAATGAACAAGGAGGATGACATATGGGGACCCTATGACAAGGAAGTTATTAATGGGGGAGAGGAGGATCAGGTGTTGAGTTTTGAATTTTTCAACGACATCATGAACAGTTACTGCTCCGAACCAAGTGGGTGTTGGACCATTTCTGATGAAGGTTACAGAGAGAGCAGTGAAGTGGGTTGGAATAAAACTTGTGACCGGGAGAAGCAGTGCTTTTGTTCAGCAAAGGCTTCTTCTGATTCTGACTTATGCCAAAGCGCGGTGCAGCTAGATCATAAGAATGAGTCTTTATCGTGGGAGCAGCATCAGAGCCTACTCTCTTGGCTTTGCGAAGATGAAGACTGGGAGAAGGATTTGCAGAGCGTTGGTGAGATTGATCCTCAGAAACAAAAGGACATGGTTGATTGGTTTCTCTCTTGA 1041 0.4457 MGRAPCCEKVGMKKGRWTAEEDEILTKYIQANGEGSWRTLPKNAGLLRCGKSCRLRWINYLRADLKRGDISVEEENTIVKLHASLGNRWSLIASHLPGRTDNEIKNYWNSHLSRKVYIFRSKNTTKPDIITFTLPPKRKRGRTSRWAMKKNKTYCAPKQKQPLLPAVPLPPTPPLETEKHSSTHENTTTQEEENIGTKAIWIEGEKEIMNKEDDIWGPYDKEVINGGEEDQVLSFEFFNDIMNSYCSEPSGCWTISDEGYRESSEVGWNKTCDREKQCFCSAKASSDSDLCQSAVQLDHKNESLSWEQHQSLLSWLCEDEDWEKDLQSVGEIDPQKQKDMVDWFLS 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02071 346 MobiDBLite consensus disorder prediction 160 192 - -
Vimu6g02071 346 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vimu6g02071 346 CDD SANT 16 61 IPR001005 -
Vimu6g02071 346 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vimu6g02071 346 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vimu6g02071 346 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vimu6g02071 346 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 191 - -
Vimu6g02071 346 Gene3D - 13 66 - -
Vimu6g02071 346 FunFam Myb transcription factor 71 116 - -
Vimu6g02071 346 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vimu6g02071 346 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Vimu6g02071 346 CDD SANT 71 112 IPR001005 -
Vimu6g02071 346 Gene3D - 71 116 - -
Vimu6g02071 346 SMART sant 13 63 IPR001005 -
Vimu6g02071 346 SMART sant 66 114 IPR001005 -
Vimu6g02071 346 FunFam Myb transcription factor 11 67 - -
Vimu6g02071 346 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02071 Vimu-Chr6 18495059 18498227 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02071 1 332 MYB Transcription Factor Family AT5G49330 43.296 1.59e-77 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu6g02071 Myb_DNA-binding 2.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02071 K09422 - gmx:100817316 375.555