Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02070 ATGGCGCATCGAAGAGTCAATCTCTTGTTCCTTCTGTGCGCTCTCTGCTATTCTCTTAGTGCCATTGCCGGGAAGAGCTATTACGATATACTTCAAGTGTCGAAGGGTGCATCGGACGATCAGATAAAGAGGGCGTATCGGAAGCTAGCCTTGAAGTATCATCCTGATAAGAACCCGGGCAATGAAGAAGCGAACAGGAAATTTGCTGAGATTAACAATGCGTATGAAGTGTTGTCGGATAGGGAGAAAAGGGGCATTTATGACAGGTACGGTGAGGAGGGTTTGAAGCAGCATGCTGCTGGTGGAGGTGGAGGTGGTGGAATGAATTTCCAGGATATTTTTAGCACTTTCTTTGGTGGAGGATCGATGGAAGAAGAAGAGAAAATTGTAAAAGGAGATGACGTGGTTGTTGAATTGGATGCAACACTTGAAGATTTGTACATGGGGGGTACCTTGAAGGTCTGGAGGGAAAAGAATGTACTAAAGTCAGCACCTGGGAAAAGACGCTGTAACTGTAGAAACGAGGTTTATCACAAGCAAATTGGGCCTGGGATGTTTCAACAAATGACAGAGCAGGTTTGTGAGCAATGTCCTAATGTCAAATACGTAAGGGAGGGGTATTTCGTCACAGTTGATATTGAGAAAGGCATGCAAGATGGACAGGAGGTGCTGTTTTATGAGGATGGTGAGCCAATAATTGATGGAGAATCTGGAGATTTAAGGTTTCGTATCCGTACTGCACCACATGATCTCTTTAGAAGAGAAGGCAATGACCTGCACACTACTGTCACTATAACTCTGGTTCAAGCCCTTGTTGGTTTTGAGAAGACCATTACGCACCTAGATGAGCATCTGGTGAACATAGGCACAAAGGAAATCACAAAACCAAAGCAGGTGAGGAAGTTCAAAGGGGAGGGTATGCCATTGCATATGAACAACAAAAAGGGAGATCTTTACGTCACTTTTGAGGTTCTATTCCCCACGTCATTAACGGAGGATCAGAAAACAAAGATAAAAGCAATTCTTGGTTAG 1032 0.4409 MAHRRVNLLFLLCALCYSLSAIAGKSYYDILQVSKGASDDQIKRAYRKLALKYHPDKNPGNEEANRKFAEINNAYEVLSDREKRGIYDRYGEEGLKQHAAGGGGGGGMNFQDIFSTFFGGGSMEEEEKIVKGDDVVVELDATLEDLYMGGTLKVWREKNVLKSAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCEQCPNVKYVREGYFVTVDIEKGMQDGQEVLFYEDGEPIIDGESGDLRFRIRTAPHDLFRREGNDLHTTVTITLVQALVGFEKTITHLDEHLVNIGTKEITKPKQVRKFKGEGMPLHMNNKKGDLYVTFEVLFPTSLTEDQKTKIKAILG 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02070 343 SUPERFAMILY HSP40/DnaJ peptide-binding domain 252 336 IPR008971 GO:0006457|GO:0051082
Vimu6g02070 343 CDD DnaJ_C 133 330 - -
Vimu6g02070 343 Gene3D - 127 248 - -
Vimu6g02070 343 SUPERFAMILY HSP40/DnaJ peptide-binding domain 130 259 IPR008971 GO:0006457|GO:0051082
Vimu6g02070 343 Coils Coil 61 81 - -
Vimu6g02070 343 Pfam DnaJ C terminal domain 136 327 IPR002939 -
Vimu6g02070 343 PANTHER DNAJ HOMOLOG SUBFAMILY B MEMBER 11 7 342 - -
Vimu6g02070 343 Gene3D DnaJ domain 23 126 IPR036869 -
Vimu6g02070 343 Gene3D - 249 327 - -
Vimu6g02070 343 FunFam DnaJ subfamily B member 11 248 343 - -
Vimu6g02070 343 ProSitePatterns Nt-dnaJ domain signature. 68 87 IPR018253 -
Vimu6g02070 343 ProSiteProfiles dnaJ domain profile. 26 91 IPR001623 -
Vimu6g02070 343 PRINTS DnaJ domain signature 63 83 IPR001623 -
Vimu6g02070 343 PRINTS DnaJ domain signature 83 102 IPR001623 -
Vimu6g02070 343 PRINTS DnaJ domain signature 28 46 IPR001623 -
Vimu6g02070 343 PRINTS DnaJ domain signature 46 61 IPR001623 -
Vimu6g02070 343 SUPERFAMILY Chaperone J-domain 24 122 IPR036869 -
Vimu6g02070 343 CDD DnaJ 27 80 IPR001623 -
Vimu6g02070 343 SMART dnaj_3 25 83 IPR001623 -
Vimu6g02070 343 FunFam DnaJ protein ERDJ3B 23 127 - -
Vimu6g02070 343 Pfam DnaJ domain 27 88 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02070 Vimu-Chr6 18483965 18488403 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02070 18 117 C2H2 Transcription Factor Family AT1G74250 37.736 3.66e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02070 K09517 - gmx:100799701 632.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02070 6 18483965 18488403 Vimu6g02070 6 18483965 18488403 ECH