Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02063 ATGGCAGAGGTTGTTTTGTTAGTCGATGATTTGAAACTGCTTTCTGGGATTCCTCGCTGTAGAATTTGTCACGAAGAGGAGTTTGAAAGCATAGAAACCTTGGAAGCACCTTGTGCTTGTTCTGGAACCGTTAAGTTTGCTCATAGAGATTGCATACAAAGATGGTGTAACGAGAAAGGAAATACAACCTGTGAAATATGTCTCCAGCAATATGAACCCGGATATTCAGCTCCACCCAAGAAGTCTAAGATAAATGATGAAGCAATGTCCATTAGGGAGGAAGAAGAAGAGTCAAACGAAAGAACAGAGATAACGGTTGAAGGAGTTGCCGTGGAAAGCGATTACTCGGAATGCAGTTCAGGCGGTGACAGAAGCGCGTCTTGCTGTCGATCACTTGCAATAGCTAGTGGACTCAGACTCACTTCTGCTATTGCCAGTTGCGTTGAATTGGTTTGCCAACAACGCATGGCCGCCCCAAGAGTTGAAATCAACATTCTCTCTTTCATGTGGTTGTGTTTGCTTTCAAATGGAACGCAAGATTATCCATTTACACTACTTACTGTAATTATATTAAAGGCTAGCGGAATTATTATACCTATGTACATAGTTATTAAGATTGTTGGAGCCATTCAGAACAGTAGTGAACAGTATCAGGATTATGACGATGAAGATGAGATACGGCATAATGTAAATTTAAGAGATTCATAG 708 0.4096 MAEVVLLVDDLKLLSGIPRCRICHEEEFESIETLEAPCACSGTVKFAHRDCIQRWCNEKGNTTCEICLQQYEPGYSAPPKKSKINDEAMSIREEEEESNERTEITVEGVAVESDYSECSSGGDRSASCCRSLAIASGLRLTSAIASCVELVCQQRMAAPRVEINILSFMWLCLLSNGTQDYPFTLLTVIILKASGIIIPMYIVIKIVGAIQNSSEQYQDYDDEDEIRHNVNLRDS 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02063 235 SUPERFAMILY RING/U-box 18 72 - -
Vimu6g02063 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 77 IPR013083 -
Vimu6g02063 235 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
Vimu6g02063 235 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 19 216 IPR033275 -
Vimu6g02063 235 CDD RING_CH-C4HC3_MARCH 20 67 - -
Vimu6g02063 235 FunFam E3 ubiquitin-protein ligase MARCH4 9 77 - -
Vimu6g02063 235 SMART ringv_2 19 68 IPR011016 GO:0008270
Vimu6g02063 235 Pfam Protein of unknown function (DUF3675) 73 135 IPR022143 -
Vimu6g02063 235 Pfam Protein of unknown function (DUF3675) 171 206 IPR022143 -
Vimu6g02063 235 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
Vimu6g02063 235 ProSiteProfiles Zinc finger RING-type profile. 20 67 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02063 Vimu-Chr6 18437986 18439941 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02063 20 67 C3H Transcription Factor Family AT2G37950 42.857 6.96e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02063 - - gmx:100802379 304.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02063 6 18437986 18439941 Vimu6g02063 6 18437986 18439941 ECH
Vimu6g02063 6 18437986 18439941 Vimu3g01843 3 33185549 33187783 PCT