Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02061 ATGACCACTAAGGATCTTGATTTCAATGCAGACATAGCTAGGGTTTGTAGTCTCTCGCTTTCTTCTCCCACTCTCACTGATTTCTTTTCCGATTCGGTTAATTCAATCGTTTTTTCTCCAGCTCTGGCGAAGGACTTCCTTTCCAATTTCGCAGACGCCAATGGCGAAGCTAAATATCGGAATATCTTGCAAGACGTTGCAAACCACAAAACTAAAGCAGTTCAGATTGACCTTGAGGACTTAATTAACTACAAGGATTTAGACGAAGAATTTCTTAGTCGTGTTACCGAGAATACTCGAAGGTATATCGGAATTTTCTCCAATGCAGTTGACGAGCTCATGCCAGTGTCTACTGAGGCTTTCACGGATGATGATCATGACATATTGATGACTCAGAGAACTGATGAAGGAGGGGAAGGTGTTGACGGTTCTGACCCCCTTCAGAAGATGCCTCCTGAAATCAAGCGCTATTATGAGCTTTATATCAAAGCATCTTCGAAAGGACGACCATTTACAATTAGGGAGGTGAAAGCTTCGAACATTGGTCAGCTTGTAAGAATCTCTGGTATTGTGACACGTTGTTCGGATGTCAAACCATTGATGAAAGTGGCTGTATACATGTGCGAGGATTGTGGATTTGAAATTTACCAGTTGGTCCTTCACGTTGTTATTCTCTGCCTTCCTAAACAGGAAGTAACCGCTCGAGTCTTCATGCCCTTGTTTGAATGCCCATCAAAGCGCTGTGCTACAAATAGAAGAAAGGGAAATGTTATCCTTCAACTGAGAGCATCAAAGTTTTTGAGATTTCAGGAGGCCAAAATTCAAGAATTAGCTGAACATGTTCCCAAAGGCCATATTCCACGATCAATGACCGTCCATTTAAGAGGAGAGCTCACCAGAAAGGTGGCTCCGGGTGATGTTGTTGAATTTTCTGGGATTTTTCTTCCTATACCTTACACTGGTTTTCGAGCAATGCGCGCAGGCTTAGTTGCTGACACTTACTTGGAGGCCATGTCTGTAACTCATTTCAAGAGAAAATATGAAGAATATGAACTTCGAGGAGACGAGGAAGAACAGATTGCGCGATTAGCAGAGGATGGTGACATCTATAATAAATTATCACGATCACTTGCTCCTGAAATATTTGGACACGATGACATTAAAAAAGCACTGCTTCTTCTCCTTGTTGGTGCTCCACACCGGACCTTGAAGGATGGAATGAAGATTAGAGGAGATTTACATATATGTTTGATGGGCGATCCTGGTGTTGCCAAGAGTCAGCTTCTTAAACACATAATCAATGTAGCACCCAGAGGGGTGTACACCACTGGCAGAGGAAGTAGTGGAGTTGGTCTAACTGCTGCTGTTCAAAAAGATCCAGTGACAAATGAGATGGTTCTTGAAGGTGGAGCATTGGTGTTAGCAGATATGGGCATATGTGCCATTGATGAATTTGACAAGATGGATGAGTCAGATCGTACAGCTATTCACGAAGTTATGGAACAACAGACTGTTAGTATTGCGAAGGCTGGAATCACTACATCTCTTAATGCAAGGACTGCTGTTCTTGCTGCTGCTAATCCAGCATGGGGAAGATATGATCTCAGAAGAACTCCAGCTGAAAATATTAATCTTCCACATGCCCTTCTATCAAGGTTTGATCTTCTGTGGTTAATCCTTGATCGAGCTGATATGGATAATGATCTTGAAATGGCTAGGCATGTTGTATACGTTCACCAAAATAAGGAGTCTCCTGCTCTTGGATTCACTCCTCTTGATCCATCTGTTCTACGTGCATACATATCAGCTGCAAGAAGACTGTCACCAAGTGTCCCCAGGGAACTGGAAGAGTATATTGCTACTGCATACTCCAGCATCCGTCAAGAGGAAGCAAGGTCCAATGCTCCACATTCCTACACTACTGTCAGAACATTACTCAGTATTCTCCGCATATCAGCTGCACTAGCAAGACTCCGTTTTTCAGAAACTGTTGCTCAAAGTGATGTGGACGAAGCACTGAGGTTAATGCAGATGTCAAAATTCTCTTTGTACTCTGATGACCGTCAAAAGTCCGGACTTGATGCCATATCTGATATTTATTCCATAGTGCGAGATGAAGCAGCTAGAGCTAGCCGAGTGGATGTCAGCTATGCCCATGCACTGAACTGGATATCTAGGAAGGGTTACAGCGAAGCTCAGTTGAAAGAGTGCTTGGAAGAGTATGCAGCACTAAATGTATGGCAGATACATCCACATACCTTTGACATTAGATTTATTGATGCTTGA 2286 0.4291 MTTKDLDFNADIARVCSLSLSSPTLTDFFSDSVNSIVFSPALAKDFLSNFADANGEAKYRNILQDVANHKTKAVQIDLEDLINYKDLDEEFLSRVTENTRRYIGIFSNAVDELMPVSTEAFTDDDHDILMTQRTDEGGEGVDGSDPLQKMPPEIKRYYELYIKASSKGRPFTIREVKASNIGQLVRISGIVTRCSDVKPLMKVAVYMCEDCGFEIYQLVLHVVILCLPKQEVTARVFMPLFECPSKRCATNRRKGNVILQLRASKFLRFQEAKIQELAEHVPKGHIPRSMTVHLRGELTRKVAPGDVVEFSGIFLPIPYTGFRAMRAGLVADTYLEAMSVTHFKRKYEEYELRGDEEEQIARLAEDGDIYNKLSRSLAPEIFGHDDIKKALLLLLVGAPHRTLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQKDPVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGRYDLRRTPAENINLPHALLSRFDLLWLILDRADMDNDLEMARHVVYVHQNKESPALGFTPLDPSVLRAYISAARRLSPSVPRELEEYIATAYSSIRQEEARSNAPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMSKFSLYSDDRQKSGLDAISDIYSIVRDEAARASRVDVSYAHALNWISRKGYSEAQLKECLEEYAALNVWQIHPHTFDIRFIDA 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02061 761 Gene3D - 41 131 - -
Vimu6g02061 761 SMART mcm 169 681 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vimu6g02061 761 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 44 691 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vimu6g02061 761 Gene3D - 171 344 IPR012340 -
Vimu6g02061 761 SUPERFAMILY Nucleic acid-binding proteins 43 337 IPR012340 -
Vimu6g02061 761 Pfam MCM N-terminal domain 44 161 IPR027925 -
Vimu6g02061 761 Pfam MCM AAA-lid domain 596 679 IPR041562 -
Vimu6g02061 761 ProSitePatterns MCM family signature. 478 486 IPR018525 GO:0003677|GO:0005524|GO:0006260
Vimu6g02061 761 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 379 691 IPR027417 -
Vimu6g02061 761 Gene3D - 354 686 IPR027417 -
Vimu6g02061 761 SMART AAA_5 411 564 IPR003593 GO:0016887
Vimu6g02061 761 Pfam MCM P-loop domain 357 579 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vimu6g02061 761 ProSiteProfiles MCM family domain profile. 369 575 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vimu6g02061 761 PRINTS Mini-chromosome maintenance (MCM) protein family signature 470 484 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vimu6g02061 761 PRINTS Mini-chromosome maintenance (MCM) protein family signature 410 425 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vimu6g02061 761 PRINTS Mini-chromosome maintenance (MCM) protein family signature 498 511 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vimu6g02061 761 PRINTS Mini-chromosome maintenance (MCM) protein family signature 549 557 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vimu6g02061 761 PRINTS Mini-chromosome maintenance (MCM) protein family signature 522 534 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vimu6g02061 761 CDD MCM7 372 679 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Vimu6g02061 761 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 206 217 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Vimu6g02061 761 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 150 162 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Vimu6g02061 761 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 188 199 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Vimu6g02061 761 FunFam DNA replication licensing factor MCM7 354 686 - -
Vimu6g02061 761 FunFam DNA replication licensing factor MCM7 39 130 - -
Vimu6g02061 761 Pfam MCM OB domain 173 316 IPR033762 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02061 Vimu-Chr6 18422535 18427362 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02061 41 759 Core DNA Replication Machinery Family AT4G02060 84.006 0.0 1254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02061 K02210 - gmx:100802903 1320.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02061 6 18422535 18427362 Vimu6g02061 6 18422535 18427362 ECH