Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02059 ATGGCATCGATTCAACGTTCGGCGACGAGCTCTGGATCTGAGGCAGGAGATCCGCAAATCGACGAGAGAAAGCGGAAGAGAATGCTGTCGAACCGCGAATCCGCGCGGCGATCGCGGATGAGGAAGCAGAAACAGCTGGAGGATTTGACCGATGAGGTTAGCAGATTGCAAGGCGCGAACAAGAAGCTTGTGGAGAACATAAAGACCAAGGAAGAAGCGTGCGCTGAGACCGAATCAGCGAACAGCATTCTGAGGGCTCAGACCATGGAACTGACCGAACGATTGCGCTTCTTGAACTCTATCCTTGAAATCGCTGAAGAGGTCGGAGGTTTATCCGTTGAAATTCCCGATATTCCAGATCCTCTCCTCAAGCCGTGGCAGATTCCTCATCCGACGCAACCGATTATGGCCACCTCAAATATGTTTCTGCGTTGA 435 0.5195 MASIQRSATSSGSEAGDPQIDERKRKRMLSNRESARRSRMRKQKQLEDLTDEVSRLQGANKKLVENIKTKEEACAETESANSILRAQTMELTERLRFLNSILEIAEEVGGLSVEIPDIPDPLLKPWQIPHPTQPIMATSNMFLR 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02059 144 SMART brlzneu 19 83 IPR004827 GO:0003700|GO:0006355
Vimu6g02059 144 PANTHER BZIP TRANSCRIPTION FACTOR 44 5 138 - -
Vimu6g02059 144 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 21 68 IPR004827 GO:0003700|GO:0006355
Vimu6g02059 144 MobiDBLite consensus disorder prediction 1 51 - -
Vimu6g02059 144 SUPERFAMILY Leucine zipper domain 23 72 IPR046347 GO:0003700|GO:0006355
Vimu6g02059 144 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 26 41 IPR004827 GO:0003700|GO:0006355
Vimu6g02059 144 Coils Coil 32 80 - -
Vimu6g02059 144 CDD bZIP_plant_GBF1 24 75 IPR045314 GO:0003700|GO:0006355
Vimu6g02059 144 Gene3D - 21 78 - -
Vimu6g02059 144 MobiDBLite consensus disorder prediction 1 16 - -
Vimu6g02059 144 Pfam bZIP transcription factor 23 81 IPR004827 GO:0003700|GO:0006355
Vimu6g02059 144 MobiDBLite consensus disorder prediction 17 51 - -
Vimu6g02059 144 FunFam BZIP transcription factor 21 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02059 Vimu-Chr6 18404902 18405336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02059 1 142 bZIP Transcription Factor Family AT3G62420 52.055 1.74e-46 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vimu6g02059 bZIP_1 1.7e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02059 K25786 - gmx:778144 240.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02059 6 18404902 18405336 Vimu6g02059 6 18404902 18405336 ECH
Vimu6g02059 6 18404902 18405336 Vimu3g01847 3 33246524 33248434 PCT