Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02051 ATGGAAATTGACCAATTTTCATCCACAGCTTTAAATTTAAGAGAAATCCTCGTGGGTTATGGCTCTACACAAGAGGATGTGTTTCAAGAGAAAGAGAGTTTTTCTGGAATGGAATTGCTGGGACCTATTGAGGATGAAAAAGGAACCAAACTGTTCGAGGATGAAGATCAGAAACAGCTACAAGAACCCCAAGTCGATAAGTTGTTAGAAGAGTTTAACTATGACTATGATATGCAACTAAAACCAACACCACAGTTCGATGGAACTACATGGCCAGCGAAACATGACATAGAATCAGCTGAACACAATAATCATGTGCCACCATCATTAGCATCCTTAGAGCTGCTGAGAAACTACAGTAGCAGATTTAAGAGGATAAGCGAGCAAAATATAGCGAAACCTTCTTTGGATCATCACCAGATATCAACTGAAGAAATTATGAGAGTAGCTGGAGCAAGATATGTTCAATATTCTGCACATTGGAATGATAGTTTTTGTATCCCTATGCACCCATACGGATTGGATTTCGGTGGTTTGTCTGAGGAAGAAAATAGAGACGTAGAACTTGCTCAGTTTCTCCTTGCTGCAGCTGAGAGGGTAGGTTGCCACCAGTTTGAACGTGCAAACAGATTACTTCTCCACTGTCAACTGAATTCATCACCCGATAATGGAAGCCCCGTTCAAAGAGTTATCTTTCACTTCGCCCAAGCACTTGGAGAGAGAATCAACAGAGGATTGGGAAGAACGACAGCGAAGGGATCAGAGAAAAAAGAAGAAAGGGGGTGGATTCAAAAGATTGACACCAATGCTGCCCTAACATTCCATCAAAATATTCCTTTCAATCAAGTCATGCAATTCACCGGAATACAAACTATAGTGGAACATGTTGCATCTGAGACCAAAATTCATGTTATTGATCTCGAAACAATATGTGGGGTGCACAATACAATATTGATGCAAGCACTGACAGAACGGCAGGATTGCAAAGTGCAACTTTTGAAGATAACTGCACTTGCACTTAATTCACGAAGAAGCATGATACAAGAGACTGGAAAAAGGTTAGCCAGTTTTGCTGAATCATTGAACTTGCCCTTTTCATATAATGCAGTTTTTGTGAGAGACTTTGCAGAGATAAGGGAAGGTGATTTTGAAATTGGAGAGGGTGAAGCAGTGGCTGTGTACTCTCCATATTTTCTGAGGTGCATGGTATCAAGGCCAGATTGTATGGAAAACTTGATGAGAGTTATATGGAATATGAAGCCAGTTATAATGATAGTTCTTGAAGTTGAAGCAAACCATAACTCACCCATCTTTGTTAACCGGTTCATTGAAGCTTTGTTCTTCTACTCAGCTTATTTTGATTGCCTTGGAAGCTGCATAAATGATGAAAATGATGAGAGCAGAAGGAAAATAGAAGCAGTGTTATCTGAAGGGATAAGGGAAATTGTTGGAATGGAAGGGAGAGAAAGAAAAGTTAGGAATGTGAAGATAGATGTTTGGAGAAAATTCTTTGCAAGGTACCGAATGGTAGAAACAGGGTTTAGTGAGTCATCCCTTTACCAAGCTCACCTGGTGAACAAAGAGTTTGCTTTTGGGAAATTCTGCACTTTAGAAAAGAATGGCAAGTGTCTTATAGTTGGATGGAAAGGAACTCCAATTCATTCCGTCTCGGCTTGGAGGTTTCTTTGA 1689 0.4008 MEIDQFSSTALNLREILVGYGSTQEDVFQEKESFSGMELLGPIEDEKGTKLFEDEDQKQLQEPQVDKLLEEFNYDYDMQLKPTPQFDGTTWPAKHDIESAEHNNHVPPSLASLELLRNYSSRFKRISEQNIAKPSLDHHQISTEEIMRVAGARYVQYSAHWNDSFCIPMHPYGLDFGGLSEEENRDVELAQFLLAAAERVGCHQFERANRLLLHCQLNSSPDNGSPVQRVIFHFAQALGERINRGLGRTTAKGSEKKEERGWIQKIDTNAALTFHQNIPFNQVMQFTGIQTIVEHVASETKIHVIDLETICGVHNTILMQALTERQDCKVQLLKITALALNSRRSMIQETGKRLASFAESLNLPFSYNAVFVRDFAEIREGDFEIGEGEAVAVYSPYFLRCMVSRPDCMENLMRVIWNMKPVIMIVLEVEANHNSPIFVNRFIEALFFYSAYFDCLGSCINDENDESRRKIEAVLSEGIREIVGMEGRERKVRNVKIDVWRKFFARYRMVETGFSESSLYQAHLVNKEFAFGKFCTLEKNGKCLIVGWKGTPIHSVSAWRFL 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02051 562 ProSiteProfiles GRAS family profile. 180 560 IPR005202 -
Vimu6g02051 562 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 135 550 IPR005202 -
Vimu6g02051 562 Pfam GRAS domain family 190 560 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02051 Vimu-Chr6 18360933 18362786 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02051 187 561 GRAS Transcription Factor Family AT1G66350 28.191 1.76e-42 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vimu6g02051 GRAS 2.7e-77 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02051 - - vum:124820400 974.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02051 6 18360933 18362786 Vimu6g02051 6 18360933 18362786 ECH