Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02049 ATGGATACTGATGCTAATGCCTCTTCCCAACCCGACTCAGAAGCATTTTCAGAGCTCAAATCATCGGAGACTCAAACATCAAAGAAAAGGAAACTGGTTGAGAAAACAGTGGTTGCAGTGAGGATAGGAGAGAATGTTGGGAAGCTGAAGAATGAAGGGCTACCTTCGGATTTTTGGTCTTGGAGGAAATATGGACAAAAACCAATCAAAGGGTCTCCATATCCAAGGGGCTATTACAAGTGCAGCACATCCAAAGGTTGTTCGGCCAAAAAGCAGGTAGAGAGATGCAGAACAGATGCTTCAATGCTCATCATCACATATACCTCTACACATAACCATCCATGCCCCACCACCACAAATTCACCCCAACAACCTAAAGAATACGAATCCGAAACGACCCAAGACCTCTCGGCTACCTCAAAGGAGGAAGATCAAGAACACACAGAAGAAGAGCAAAGGGATGATAAGCCGAGCGATGAAGGTAGAAACGAAGAAAAGTTTCTTTACCTGCAATCTCCAATACGATGCTCCCAAGACATAATAATAGAACAAGAAGACCCTTTCAAGCTAAACACGGAGAAAAACCATGAAAGAATAGATCTCCTCTTGGAGGAGGAAGAGCCCCTTTGTTACGCACAAGTGAAGAACATGTCTGGTTCAAAAAGCGAAGAACTTGATTTTTTCGACGAGCTTGAGGAGTTGCCCATGTCTTCATCTTTCTTGCACTTCACGAGGAGCATTTTTTCCGATGAAAGGATTCCCGTTGCCCCTTCTTGA 777 0.4402 MDTDANASSQPDSEAFSELKSSETQTSKKRKLVEKTVVAVRIGENVGKLKNEGLPSDFWSWRKYGQKPIKGSPYPRGYYKCSTSKGCSAKKQVERCRTDASMLIITYTSTHNHPCPTTTNSPQQPKEYESETTQDLSATSKEEDQEHTEEEQRDDKPSDEGRNEEKFLYLQSPIRCSQDIIIEQEDPFKLNTEKNHERIDLLLEEEEPLCYAQVKNMSGSKSEELDFFDELEELPMSSSFLHFTRSIFSDERIPVAPS 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02049 258 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 6 239 IPR044810 GO:0003700
Vimu6g02049 258 MobiDBLite consensus disorder prediction 109 135 - -
Vimu6g02049 258 MobiDBLite consensus disorder prediction 1 22 - -
Vimu6g02049 258 Pfam WRKY DNA -binding domain 57 114 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu6g02049 258 Gene3D WRKY domain 42 117 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu6g02049 258 ProSiteProfiles WRKY domain profile. 50 116 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu6g02049 258 MobiDBLite consensus disorder prediction 1 32 - -
Vimu6g02049 258 FunFam WRKY transcription factor 65 37 116 - -
Vimu6g02049 258 SMART WRKY_cls 55 115 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu6g02049 258 MobiDBLite consensus disorder prediction 136 163 - -
Vimu6g02049 258 SUPERFAMILY WRKY DNA-binding domain 53 116 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu6g02049 258 MobiDBLite consensus disorder prediction 109 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02049 Vimu-Chr6 18353561 18354922 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02049 22 240 WRKY Transcription Factor Family AT4G01250 38.565 9.44e-38 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu6g02049 WRKY 4.2e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02049 - - var:108328057 447.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02049 6 18353561 18354922 Vimu6g02049 6 18353561 18354922 ECH