Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02046 ATGACGAGTTTGACTCGGAGTTCACTATCTCAATCCGTAGCTATATCACTGATTTCTGGTTTTCGATCCACCTTTGCTTTCATTTGCCGACGGTCCTTGCTCCTAGATCTGAGCCGTATGCTAAAAAGGTTTCAAGGCTTGCTGCTGAAATGGATGGTTATATTATCTTGCCTGGCATTTATGATTGTGGCTGGTGAAAATGATAAAACAGTGGAGCCTCTTTCTTTATATGATTCTAGATCACCTTTGGCCTTTGCTGTTGTTCACGATCTACCTCTACCAGCAAGTCTCCATTTGTCAAAGCATGTGCTTTCTCAAGGTGCGCCAATTGAAGCATCGTCACCAGTCAGTCCTCCCTCATATGGTCCTTTCTCAAGTATTGGCCAGTCCCCTAAAAGTTCACATTTATCTATACCATTCAAAATGAAGAGTGAAATGAAAGATCCAATTCCTGGCTTTAAATATATTGCTCCTGCAGCTGCAGGCCCTTCTGCTTCAACTCAGCCACCATTGTCTCCTTATGCATCCAATTGTTGTAAACAAGACATGGTGCTGAAAAGAGCCAGTAAGAGTTGCCACTGTGCATATCCCATAAAGCTAGACCTTTTTCTTTCGAATGTCTCTCAAAGTCCTAGTTGGAATGATTTTCTTAATGAATTAGCTGTCCAGCTTGGGTTGCGAAATACCCAGATTGAACTGATAAACTTTTATGTTCTCAGTGTATCAACATTAAATATATCAATGAATATTACTCCACATAAAGGCATCAGTTTCTCTGCCAGTGAAGTTTCTAAAATAAACTCTTCGCTTTCAATGCATAAGGTTAAACTAGACCCTCGATTAGTGGGTGGATACCAACTTCTCAATATAACTTGGTTTGAACCACCAGCGCCTTCACAAGCTCCTAGGTTAGCTGCATCACCTGTGAAAACACCTTCGTATCATTCACCTACCGCTGTATCATCATCTGGTTCTTCAGGACGGCATTCAAATCTGTTTATTATTCTTGGAATTGTTATTGGCATAATCTTTATTGGTATCATATCTGTCCTTATATTCTGTTTATGTACATTCCCGCCCAAAGCAAACGCTCCTCCTGGGGAAACTGAAAAGCCAAGGATAGAGAGTACAGTTTCAGCTGTGGGTTCTCTTCCTCACCCAAGTAGTACACGCTTTATTGCTTATGAAGAGCTTAAAGAAGCAACAAACAACTTTGAAACAACGAGCGTACTTGGAGAAGGAGGGTTTGGAAGAGTTTTTAAAGGTGTCTTGAATGATGGTACTCCTGTTGCAATTAAGAGGCTTACAAGTGGAGGGCAACAGGGTGACAAAGAGTTTTTGGTGGAAGTCGAGATGCTTAGCCGCTTGCATCATCGTAACCTTGTAAAACTAGTGGGATACTACAGTAATCGTGATTCATCACAAAATTTACTTTGCTATGAGCTTGTTCCCAATGGAAGTTTGGAGGCTTGGCTTCATGGTCCCTTGGGAATTAATTGTCCTTTGGATTGGGACACCAGAATGAAAATTGCGCTTGATGCTGCAAGGGGGCTTTCATACCTGCACGAAGACTCACAGCCATGTGTAATACATAGAGACTTCAAGGCATCCAACATATTGCTGGAGAACAACTTTCACGCCAAGGTTGCAGATTTTGGTCTTGCTAAGCAAGCACCTGAAGGCAGATCAAATTATTTGTCTACTCGTGTCATGGGGACATTTGGGTACGTAGCTCCTGAGTATGCCATGACTGGACACCTACTTGTTAAAAGTGATGTTTATAGCTATGGCGTTGTCTTACTGGAACTGCTTACTGGTAGGAAGCCTGTGGATATGTCACAGCCAACTGGGCAAGAGAACCTTGTTACTTGGGCTAGGCCAATCCTTCGAGATAAGGATAGGTTGGAAGAGATTGTTGATCCAAGCCTCGGGGGAAAGTATCCTAAAGAAGATTTTGTACGTGTTTGCACTATTGCTGCAGCCTGTGTTGCTCCCGAAGCAAACCAGCGACCCACAATGGGTGAAGTGGTGCAGTCACTTAAAATGGTGCAGCGCGTCACAGAATACCATGATTCTCTGTTGGCCTCATCCAATACTCGAGCCAACCTGAGACAGTCCTCTAGCACTTTTGAATTTGATGGAACATCTTCTGTATTCTCTTCGGGTCCTTACTCTGGCATAAGTGCCTTTGAAAATGACAACATTTCAAGGACTGTGGTTTTCTCTGAAGATCTTTGTGAAGGACGATAA 2250 0.4267 MTSLTRSSLSQSVAISLISGFRSTFAFICRRSLLLDLSRMLKRFQGLLLKWMVILSCLAFMIVAGENDKTVEPLSLYDSRSPLAFAVVHDLPLPASLHLSKHVLSQGAPIEASSPVSPPSYGPFSSIGQSPKSSHLSIPFKMKSEMKDPIPGFKYIAPAAAGPSASTQPPLSPYASNCCKQDMVLKRASKSCHCAYPIKLDLFLSNVSQSPSWNDFLNELAVQLGLRNTQIELINFYVLSVSTLNISMNITPHKGISFSASEVSKINSSLSMHKVKLDPRLVGGYQLLNITWFEPPAPSQAPRLAASPVKTPSYHSPTAVSSSGSSGRHSNLFIILGIVIGIIFIGIISVLIFCLCTFPPKANAPPGETEKPRIESTVSAVGSLPHPSSTRFIAYEELKEATNNFETTSVLGEGGFGRVFKGVLNDGTPVAIKRLTSGGQQGDKEFLVEVEMLSRLHHRNLVKLVGYYSNRDSSQNLLCYELVPNGSLEAWLHGPLGINCPLDWDTRMKIALDAARGLSYLHEDSQPCVIHRDFKASNILLENNFHAKVADFGLAKQAPEGRSNYLSTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPTGQENLVTWARPILRDKDRLEEIVDPSLGGKYPKEDFVRVCTIAAACVAPEANQRPTMGEVVQSLKMVQRVTEYHDSLLASSNTRANLRQSSSTFEFDGTSSVFSSGPYSGISAFENDNISRTVVFSEDLCEGR 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02046 749 FunFam Receptor-like serine/threonine-protein kinase ALE2 385 482 - -
Vimu6g02046 749 ProSitePatterns Protein kinases ATP-binding region signature. 411 433 IPR017441 GO:0005524
Vimu6g02046 749 ProSitePatterns Serine/Threonine protein kinases active-site signature. 529 541 IPR008271 GO:0004672|GO:0006468
Vimu6g02046 749 Gene3D Transferase(Phosphotransferase) domain 1 483 702 - -
Vimu6g02046 749 FunFam Receptor-like serine/threonine-protein kinase ALE2 483 700 - -
Vimu6g02046 749 SUPERFAMILY Protein kinase-like (PK-like) 380 682 IPR011009 -
Vimu6g02046 749 CDD STKc_IRAK 411 681 - -
Vimu6g02046 749 Pfam Protein tyrosine and serine/threonine kinase 407 680 IPR001245 GO:0004672|GO:0006468
Vimu6g02046 749 ProSiteProfiles Protein kinase domain profile. 405 693 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g02046 749 Gene3D Phosphorylase Kinase; domain 1 386 482 - -
Vimu6g02046 749 PANTHER OS01G0750732 PROTEIN 175 696 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02046 Vimu-Chr6 18325661 18332042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02046 47 749 Receptor kinase-like Gene Family AT4G02010 67.651 0.0 946
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Vimu6g02046 Pkinase 1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02046 - - gmx:100775615 1228