Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02045 ATGTCGAAGAGGAAGTTCGGATTCGAAGGCTTCGGCATAAACCGCCAATCGACCTACAGCTTCGAGCGATCCCAGGCCCCTCAGCGACTCTACGTCCCTCCTTCCTCCCGTCACGGCCACGACAACTACGAGGACACCGACCTCGACAACATTGACTACGACGACAATAACAACGACGAAGGGAACAAGAACAGCAACGATGGCGACGAAGTTGACCCTCTCGACGCCTTCATGGAGGGGATTCACGAGGAGATGAAGGCGGCGCCGCCGCCCAAGCCGAAGGAGAAGGCCGAGGACCGGTACCGGGACGACGACGACGATCCCATGGAGAGCTTTCTGAAGGCAAAGAAGGATTTAGGGCTGACTCTCGCTTCCGAGGCGCTGCACGCTGGGTACGATTCTGATGAGGAGGTTTATGCTGCTGCCAAAGCCGTGGACGCTGGTATGAGTGAGCAGGACGTAAGCGAATACCGGAAGAGTTTGGCTATTCGGGTATCTGGTTTTGATGTTCCCAAGCCAATAAAGGCTTTTGAGGACTGTGGATTTCCGTCTCAGATTATGAATGCTATAAAAAAACAAGGGTATGAGAAGCCGACATCTATACAATGTCAGGCTTTGCCGGTTGTGCTTTCCGGCAGGGATATTATTGGTATAGCTAAAACTGGTTCTGGTAAAACGGCTTCTTTTGTGCTTCCTATGATTGTGCATATCATGGATCAGCCTGAGCTTCAGAAGGAAGAGGGGCCTATAGGGGTGATATGTGCACCTACCAGAGAATTGGCTCATCAGATATACCTGGAGGCCAAGAAATTCGCAAAAGCGTATGGGGTACGTGTATCTGCTGTCTATGGTGGAATGTCAAAACTTGAACAGTTCAAAGAACTTAAAGCTGGATGTGAGATAGTTGTTGCTACCCCTGGCAGATTGATAGACATGCTGAAAATGAAGGCATTGACGATGACGAGAGCAACTTACCTGGTGCTTGATGAGGCGGATCGAATGTTTGATCTGGGGTTTGAACCTCAAGTAAGGTCCATTGTTGGGCAGATTAGGCCAGACCGTCAAACATTACTCTTTTCTGCAACAATGCCTCGTAAAGTTGAAAAGTTGGCCAGGGAAATCCTTACTGATCCTATCAGAGTAACTGTTGGAGAGGTGGGGATGGCAAATGAAGATATTACTCAAGTTGTTTGTGTGATTCCTTCTGATACTGAAAAGTTGCCTTGGCTTCTGGAAAAGCTACCTGAAATGATTGATCAAGGTGATACTCTAGTTTTTGCTTCAAAGAAGGCCACTGTGGATGAAATAGAATCGCAGTTGGCTCAAAGAGGCTTTAAAGTTGCTGCCCTGCATGGTGATAAAGATCAAGCTTCTCGGATGGATATTTTGCAGAAGTTTAAATCCGGTCTCTACCATGTGCTCATTGCAACTGATGTTGCAGCCCGGGGTCTTGACATCAAGTCAATTAAGTCAGTGGTAAACTTTGATATTGCAAAGGATATGGACATGCATGTCCATCGCATTGGAAGAACAGGTCGTGCTGGTGACAAGGATGGGGTTGCGTACACTCTTATAACTCAGAAAGAAGCACGATTTGCTGGTGAATTGGTCAATAGCTTAGTTGCTGCTGGTCAGAATGTGTCCGCGGAGTTGATGGATCTTGCGATGAAGGATGGGAGATTCAGGTCGAAACGTGATGCAAGAAAAGGAGGTGGGAAAAAAGGCAGAGGTAGAGGTGGAGGAGGAGGTGGCCGCGGTGTGCGTGGAGTGGATTTTGGCTTGGGCATTGGATATAATCCCGAATCTAACAACGCACCATCTAACCCAGTTCCTACTCGATCTGCCGCAGTAAATTCTCTGCGGACTGGAATGATGTCACAATTTAGGAACAACTTTGTTGCTGCTTCATCGAACTCTCAGAATCAAGGATTCGGTAACAATACAAGCGTGGCTGCTAATGCTGCTAATAAGAGACCGGCACTCCCTGGTTTTGTATCTGGTGGATCAATTGGTGGTGACGTGAATACGTATCAGCACACTACTTCACCTAGTCCTGCTTCGTCAGCGGTAAATTCCAGCACTCAAGGATCTGGAGTAAATTCTGGTCAGAAGAGCATGAATAGTTCTAAACCCAAAGAGAGGCGGAGGCCATCAGGTTGGGATAGATAG 2169 0.4786 MSKRKFGFEGFGINRQSTYSFERSQAPQRLYVPPSSRHGHDNYEDTDLDNIDYDDNNNDEGNKNSNDGDEVDPLDAFMEGIHEEMKAAPPPKPKEKAEDRYRDDDDDPMESFLKAKKDLGLTLASEALHAGYDSDEEVYAAAKAVDAGMSEQDVSEYRKSLAIRVSGFDVPKPIKAFEDCGFPSQIMNAIKKQGYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTASFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLEAKKFAKAYGVRVSAVYGGMSKLEQFKELKAGCEIVVATPGRLIDMLKMKALTMTRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPRKVEKLAREILTDPIRVTVGEVGMANEDITQVVCVIPSDTEKLPWLLEKLPEMIDQGDTLVFASKKATVDEIESQLAQRGFKVAALHGDKDQASRMDILQKFKSGLYHVLIATDVAARGLDIKSIKSVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSLVAAGQNVSAELMDLAMKDGRFRSKRDARKGGGKKGRGRGGGGGGRGVRGVDFGLGIGYNPESNNAPSNPVPTRSAAVNSLRTGMMSQFRNNFVAASSNSQNQGFGNNTSVAANAANKRPALPGFVSGGSIGGDVNTYQHTTSPSPASSAVNSSTQGSGVNSGQKSMNSSKPKERRRPSGWDR 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02045 722 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 327 335 IPR000629 -
Vimu6g02045 722 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 175 203 IPR014014 GO:0003724
Vimu6g02045 722 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 322 555 IPR027417 -
Vimu6g02045 722 MobiDBLite consensus disorder prediction 600 614 - -
Vimu6g02045 722 MobiDBLite consensus disorder prediction 672 722 - -
Vimu6g02045 722 Pfam DEAD/DEAH box helicase 199 370 IPR011545 GO:0003676|GO:0005524
Vimu6g02045 722 Pfam Helicase conserved C-terminal domain 410 515 IPR001650 -
Vimu6g02045 722 MobiDBLite consensus disorder prediction 672 707 - -
Vimu6g02045 722 Gene3D - 139 383 IPR027417 -
Vimu6g02045 722 SMART ultradead3 194 396 IPR014001 -
Vimu6g02045 722 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 406 555 IPR001650 -
Vimu6g02045 722 MobiDBLite consensus disorder prediction 560 614 - -
Vimu6g02045 722 CDD SF2_C_DEAD 393 525 - -
Vimu6g02045 722 MobiDBLite consensus disorder prediction 13 31 - -
Vimu6g02045 722 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 384 IPR027417 -
Vimu6g02045 722 SMART helicmild6 434 515 IPR001650 -
Vimu6g02045 722 MobiDBLite consensus disorder prediction 708 722 - -
Vimu6g02045 722 MobiDBLite consensus disorder prediction 1 109 - -
Vimu6g02045 722 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 133 555 - -
Vimu6g02045 722 FunFam probable ATP-dependent RNA helicase DDX17 136 384 - -
Vimu6g02045 722 MobiDBLite consensus disorder prediction 56 109 - -
Vimu6g02045 722 CDD DEADc_DDX42 186 382 - -
Vimu6g02045 722 Gene3D - 384 559 IPR027417 -
Vimu6g02045 722 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 206 381 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02045 Vimu-Chr6 18319116 18322796 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02045 175 531 Eukaryotic Initiation Factors Gene Family AT3G13920 35.278 3.30e-63 215
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02045 6 18319116 18322796 Vimu6g02045 6 18319116 18322796 ECH