Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02041 ATGACGATGATGATGATGGGTGTGAAGAAGAAGGAGGATTATGCCATAGGGTCGTCGTCCTTCCATTGCAATTATCCATTTCTTGATTTCTCTGATGACAAGGGCTCTTTAGGGTTTATGGAGTTGCTGGGTGTGCAAGAATACAGTCCTCTGCTTGATTTGCCTTTAGGGTCCAATATGGAAGTGCCTCAAACCTCTGATCTTAAGGAACCACCTCAGACTAAGAAAGATTGGCCCGAGGTAACCAACCAGCAACCTGCGACTCCGAACTCTTCATCCATTTCCTCCGCGTCCAGTGAGGCTCTCAACGATGAACAAAAGAATAGAACTGTAGACCAAACACATGATGAGCACAAAAAGACAAAGGAACAGTTGAAGGCTAAGAAGACAAATCAGAAGAGACAGAGAGAACCGAGATTCGCGTTCATGACGAAAAGCGAGGTGGATCATCTGGAAGATGGGTACAGATGGAGAAAGTACGGTCAAAAAGCTGTGAAAAACAGCCCCTTTCCCAGGAGCTACTATCGTTGCACCAGTGTTTCGTGTAATGTGAAGAAACGCGTAGAGCGATCTTTTAGCGACCCAAGCATTGTGGTGACAACCTACGAAGGCCAACACACTCATCCAAGCCCGGTTATGGGTCGCTCCAACAACTTTGGTTCGCTAATGTCTGGATCTGAGAACTACATCTCCCAATATTATCAGCAGCACCATCAACAACAACTTCATGTCGATGCATTGTCTTCTCTGGGTTTCCTCTCTCCAAAGAATGTCACATTTCCTCAACAGACAGCGTTGTCGAGTGACTATGGCCGTCTTCAAGATGTTGTTCCTTCACATATGTTCAAACAAGACTAG 858 0.4569 MTMMMMGVKKKEDYAIGSSSFHCNYPFLDFSDDKGSLGFMELLGVQEYSPLLDLPLGSNMEVPQTSDLKEPPQTKKDWPEVTNQQPATPNSSSISSASSEALNDEQKNRTVDQTHDEHKKTKEQLKAKKTNQKRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSVSCNVKKRVERSFSDPSIVVTTYEGQHTHPSPVMGRSNNFGSLMSGSENYISQYYQQHHQQQLHVDALSSLGFLSPKNVTFPQQTALSSDYGRLQDVVPSHMFKQD 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02041 285 ProSiteProfiles WRKY domain profile. 146 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu6g02041 285 MobiDBLite consensus disorder prediction 105 137 - -
Vimu6g02041 285 Coils Coil 115 135 - -
Vimu6g02041 285 FunFam WRKY transcription factor 57 137 211 - -
Vimu6g02041 285 Gene3D WRKY domain 136 212 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu6g02041 285 MobiDBLite consensus disorder prediction 59 137 - -
Vimu6g02041 285 PIRSF WRKY_txn_fact_IIc 2 285 IPR017396 GO:0003700
Vimu6g02041 285 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 83 238 IPR044810 GO:0003700
Vimu6g02041 285 SMART WRKY_cls 151 210 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu6g02041 285 SUPERFAMILY WRKY DNA-binding domain 143 211 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu6g02041 285 Pfam WRKY DNA -binding domain 152 209 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu6g02041 285 MobiDBLite consensus disorder prediction 77 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02041 Vimu-Chr6 18265465 18266737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02041 29 285 WRKY Transcription Factor Family AT2G47260 45.426 2.97e-61 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu6g02041 WRKY 1.7e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02041 - - vra:106757666 552.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02041 6 18265465 18266737 Vimu6g02041 6 18265465 18266737 ECH
Vimu6g02041 6 18265465 18266737 Vimu3g01863 3 33448612 33450378 PCT