Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu6g02041 | ATGACGATGATGATGATGGGTGTGAAGAAGAAGGAGGATTATGCCATAGGGTCGTCGTCCTTCCATTGCAATTATCCATTTCTTGATTTCTCTGATGACAAGGGCTCTTTAGGGTTTATGGAGTTGCTGGGTGTGCAAGAATACAGTCCTCTGCTTGATTTGCCTTTAGGGTCCAATATGGAAGTGCCTCAAACCTCTGATCTTAAGGAACCACCTCAGACTAAGAAAGATTGGCCCGAGGTAACCAACCAGCAACCTGCGACTCCGAACTCTTCATCCATTTCCTCCGCGTCCAGTGAGGCTCTCAACGATGAACAAAAGAATAGAACTGTAGACCAAACACATGATGAGCACAAAAAGACAAAGGAACAGTTGAAGGCTAAGAAGACAAATCAGAAGAGACAGAGAGAACCGAGATTCGCGTTCATGACGAAAAGCGAGGTGGATCATCTGGAAGATGGGTACAGATGGAGAAAGTACGGTCAAAAAGCTGTGAAAAACAGCCCCTTTCCCAGGAGCTACTATCGTTGCACCAGTGTTTCGTGTAATGTGAAGAAACGCGTAGAGCGATCTTTTAGCGACCCAAGCATTGTGGTGACAACCTACGAAGGCCAACACACTCATCCAAGCCCGGTTATGGGTCGCTCCAACAACTTTGGTTCGCTAATGTCTGGATCTGAGAACTACATCTCCCAATATTATCAGCAGCACCATCAACAACAACTTCATGTCGATGCATTGTCTTCTCTGGGTTTCCTCTCTCCAAAGAATGTCACATTTCCTCAACAGACAGCGTTGTCGAGTGACTATGGCCGTCTTCAAGATGTTGTTCCTTCACATATGTTCAAACAAGACTAG | 858 | 0.4569 | MTMMMMGVKKKEDYAIGSSSFHCNYPFLDFSDDKGSLGFMELLGVQEYSPLLDLPLGSNMEVPQTSDLKEPPQTKKDWPEVTNQQPATPNSSSISSASSEALNDEQKNRTVDQTHDEHKKTKEQLKAKKTNQKRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSVSCNVKKRVERSFSDPSIVVTTYEGQHTHPSPVMGRSNNFGSLMSGSENYISQYYQQHHQQQLHVDALSSLGFLSPKNVTFPQQTALSSDYGRLQDVVPSHMFKQD | 285 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu6g02041 | 285 | ProSiteProfiles | WRKY domain profile. | 146 | 211 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Vimu6g02041 | 285 | MobiDBLite | consensus disorder prediction | 105 | 137 | - | - | |
Vimu6g02041 | 285 | Coils | Coil | 115 | 135 | - | - | |
Vimu6g02041 | 285 | FunFam | WRKY transcription factor 57 | 137 | 211 | - | - | |
Vimu6g02041 | 285 | Gene3D | WRKY domain | 136 | 212 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Vimu6g02041 | 285 | MobiDBLite | consensus disorder prediction | 59 | 137 | - | - | |
Vimu6g02041 | 285 | PIRSF | WRKY_txn_fact_IIc | 2 | 285 | IPR017396 | GO:0003700 | |
Vimu6g02041 | 285 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 83 | 238 | IPR044810 | GO:0003700 | |
Vimu6g02041 | 285 | SMART | WRKY_cls | 151 | 210 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Vimu6g02041 | 285 | SUPERFAMILY | WRKY DNA-binding domain | 143 | 211 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Vimu6g02041 | 285 | Pfam | WRKY DNA -binding domain | 152 | 209 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Vimu6g02041 | 285 | MobiDBLite | consensus disorder prediction | 77 | 104 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu6g02041 | Vimu-Chr6 | 18265465 | 18266737 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu6g02041 | 29 | 285 | WRKY Transcription Factor Family | AT2G47260 | 45.426 | 2.97e-61 | 195 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | WRKY | Vimu6g02041 | WRKY | 1.7e-26 | CL0274 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu6g02041 | - | - | vra:106757666 | 552.747 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vimu6g02041 | 6 | 18265465 | 18266737 | Vimu6g02041 | 6 | 18265465 | 18266737 | ECH | |
Vimu6g02041 | 6 | 18265465 | 18266737 | Vimu3g01863 | 3 | 33448612 | 33450378 | PCT |