Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02039 ATGTCTCATGAAGTGGTGATGATTGGTAGAGAAAGGTTATTCATGTGTGGGAATGGCGGGAGGTCCGCGATCATACGAACAAATGATCGTTTGAGGACTAATCTCGGGTGGCAGCTGATAAGTAAAGGCAGCTATTACACCATACCGGGTGCTAGGGACGTCGGGCTACGTGGTTCATACCGTCCGGACAGTGTCTTAGTGGTCGGTCATAAGTTGATGCACTTAGATACCTTGGAAGCTACTTTGGAAGACACTCTGGAGGATGTTGTGCAGGCTGAGCAACCCGTGGAGGCCGTGCCTGAAAGTTATGCAGGACCATCCGAATTGCTTGGAAAGCAGAGGAAAGCACGTCACGTTGAGCAGAAGAAAAAGGAAAAGGCCCTGCTACTTCTTGACTCTGGAGTTAACCCGTCTCTAGGGCACACGTCAGCGGTGCGTGCGGAGATGGAGATTCCAAAGGAGCAGATGGAGCAGAGGCTCAATTTCAACGGAGACCCTTCAAACCCTCATTCTCACGACAATGGCAACGGCTTCAACCACTTCCCACCCCTCGATTCAGGATACGCTCTTAACCATTCCGTTCCTCGCCCTCTCCGCAAACGCCCCTGGCACCACTCCAACCAAGGAACTTCTCCAGATCAAGTGGACAGTGCGAATAATGTAAAAGTTTATGTTGCTCCTGTTCCGAGAACTGCCACGGAGGCGGAGATCCGTCCTGTATTTGAAGAACATGGAACTATTATTGAGGTTGTTCTTTTAAAAGACAAGAGAACAGGTGTACGGCAAGGAAGTTGTTTTGTGAAATATGCAACATTTGATGGAGCTGACAGGGCTATCAAGGCTTTAAACAATCAATATACATTTGTTGGGGAATCATATCCTGTTGTTGTCAAATTTGCTGATCGAGAACTTGAACGTCTTGCTGCTCTATTTACTGGTGCCTGCCTGTACATGCTGATTGACGCGGAAGTGAGTATTGTTTTCTTTGTTTTTCCTGCCTCTTCCTTTAAAGGAGACAAGGGTGAGAAACGAGAGGGATTGTGTAGCTTTAACTTGTTTGAATAG 1065 0.4751 MSHEVVMIGRERLFMCGNGGRSAIIRTNDRLRTNLGWQLISKGSYYTIPGARDVGLRGSYRPDSVLVVGHKLMHLDTLEATLEDTLEDVVQAEQPVEAVPESYAGPSELLGKQRKARHVEQKKKEKALLLLDSGVNPSLGHTSAVRAEMEIPKEQMEQRLNFNGDPSNPHSHDNGNGFNHFPPLDSGYALNHSVPRPLRKRPWHHSNQGTSPDQVDSANNVKVYVAPVPRTATEAEIRPVFEEHGTIIEVVLLKDKRTGVRQGSCFVKYATFDGADRAIKALNNQYTFVGESYPVVVKFADRELERLAALFTGACLYMLIDAEVSIVFFVFPASSFKGDKGEKREGLCSFNLFE 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02039 354 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 223 286 IPR000504 GO:0003723
Vimu6g02039 354 MobiDBLite consensus disorder prediction 204 218 - -
Vimu6g02039 354 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 221 302 IPR000504 GO:0003723
Vimu6g02039 354 SUPERFAMILY RNA-binding domain, RBD 178 300 IPR035979 GO:0003676
Vimu6g02039 354 SMART rrm1_1 222 298 IPR000504 GO:0003723
Vimu6g02039 354 MobiDBLite consensus disorder prediction 160 175 - -
Vimu6g02039 354 MobiDBLite consensus disorder prediction 160 218 - -
Vimu6g02039 354 Gene3D - 208 307 IPR012677 -
Vimu6g02039 354 PANTHER TRANSFORMER-2-RELATED 160 300 - -
Vimu6g02039 354 FunFam Flowering time control protein FCA isoform B 206 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02039 Vimu-Chr6 18249343 18257797 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02039 208 310 Eukaryotic Initiation Factors Gene Family AT2G23350 32.039 1.76e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02039 - K13207 gmx:100795107 250.366