Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02033 ATGGATGCCAAAGATATCCTGGGATTGCCAAAAAACTCATTCCCCTCTCTTGAGAAGAAGTCTCGACCTCCCAAAGAGTCTCAACGAAAACCTGATGGCATTTCGCGCGAGGTGTATGCGCTTACAGGTGGATTGGCCCCTCTTATGCCTTCCATTGAAGCTTCTCAATTGAAGAAAAAGCCTCCTCCTCTCGAAAAGATCACTTGGCAGTGGCTTCCTTTCACCAGCTCTGCTCGTAAAGATAATCTTCAACTTTTCCACTGGGTTCGAGTTGTCAATGGTGTTCCTCCTACGGGTGACTATTCTTTTGCCAAGTATAACAAGGCAGTTGATGTGATCAAATACACAGATGAGGAGTATGACAAGTATTTGACAAATCCTATGTGGACCAAAGAGGAGACTGATCAACTATTTGACCTATGTGAGAGATTTGATCTCCGGTTTGTTGTAATAGCTGATAGGTTCCCATCATCTCGGACTGTAGAGGAATTAAAGGATAGATATTATAGTGTTTCGCGGGCTATATTGGTTGCTAGAGCTCCATCTTCTGGAGATGTTGCAGCACATCCTCTTGTTAAGGAACTGTATAATGTTTCACAAGAAATGGAGCGAAAGCGTGCACTGTCCATGGTCCTCTCTCAAACAAGGCAACAAGAACGCAGAGATGAAGAGGTTCTTGTTGAAGCAAAAAGAATAGCTGAATCTCGCATTCCACCCAAGGTTGTTGAAGAGTCTCACTTGGCTGCTTCTAATGCTGGTGCAGAAGCTACAGAGAGAGCTGTCCCTAGTGAAACTGTATCTCCATCGAATGTGCAACTTCCATCAATGGTTGTGCCTCCTACATTATCAGATAACGCATCTACTCTAGCTTCTCTTCGCATGCTACGTGTATATTTGAGAACATATGCACTTGAGCAAATGGTGCAAGCCGCAAACTCATCTGCTGGACTTCGGACTATCAAACGGGTTGAGCAAACCTTGCAAGACCTTGGGGTCAATTTGAAACCAAGAGTTCCAACAAAAGCTGTTTGTGCGGAGCACCTTGAATTAAGAAAAGAAATACTAACTTGGCTTAATCTCCAGAAACAGGTTCAATATAAAGAGGCCGAAGGTTCTTCTTTTCGTGATGGGTCATATGGTGAAACACCTGGCACACCTAAGCATTTACATCGTGCTGGGGATCAGGATCGGACATTCATTCCAGATGCAATGAATTTTGGAGTGGAAAGGGTTGGCAAAAAGGACCAAAAGCGTAAGGCACCTGGAGCTCCATCGGCTCATAAAAGACCTAGAAAACTAAAGGCCACAGATCTCTAG 1317 0.4419 MDAKDILGLPKNSFPSLEKKSRPPKESQRKPDGISREVYALTGGLAPLMPSIEASQLKKKPPPLEKITWQWLPFTSSARKDNLQLFHWVRVVNGVPPTGDYSFAKYNKAVDVIKYTDEEYDKYLTNPMWTKEETDQLFDLCERFDLRFVVIADRFPSSRTVEELKDRYYSVSRAILVARAPSSGDVAAHPLVKELYNVSQEMERKRALSMVLSQTRQQERRDEEVLVEAKRIAESRIPPKVVEESHLAASNAGAEATERAVPSETVSPSNVQLPSMVVPPTLSDNASTLASLRMLRVYLRTYALEQMVQAANSSAGLRTIKRVEQTLQDLGVNLKPRVPTKAVCAEHLELRKEILTWLNLQKQVQYKEAEGSSFRDGSYGETPGTPKHLHRAGDQDRTFIPDAMNFGVERVGKKDQKRKAPGAPSAHKRPRKLKATDL 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02033 438 Gene3D - 98 184 - -
Vimu6g02033 438 FunFam DNA methyltransferase 1-associated protein 1 97 184 - -
Vimu6g02033 438 PANTHER DNA METHYLTRANSFERASE 1-ASSOCIATED PROTEIN 1 FAMILY MEMBER 1 429 IPR027109 GO:0006281|GO:0006338|GO:0035267|GO:0043967|GO:0043968
Vimu6g02033 438 MobiDBLite consensus disorder prediction 369 438 - -
Vimu6g02033 438 SUPERFAMILY Homeodomain-like 125 174 IPR009057 -
Vimu6g02033 438 CDD SANT_DMAP1_like 129 171 - -
Vimu6g02033 438 SMART sant 125 174 IPR001005 -
Vimu6g02033 438 MobiDBLite consensus disorder prediction 1 34 - -
Vimu6g02033 438 MobiDBLite consensus disorder prediction 408 422 - -
Vimu6g02033 438 Pfam SANT/Myb-like domain of DAMP1 101 175 IPR032563 -
Vimu6g02033 438 MobiDBLite consensus disorder prediction 18 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02033 Vimu-Chr6 18209262 18215427 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu6g02033 SANT_DAMP1_like 1.3e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02033 K11324 - gmx:100818926 809.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02033 6 18209262 18215427 Vimu6g02033 6 18209262 18215427 ECH