Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02031 ATGGAGAGGAGTTTATCAGAAAATGGTTCATCTGGAACATATGGAAGCAGTGAAGAGGAGATGTCAATAACGAAAGGTCCATGGACAGAGGAAGAAGATTCGGTTCTCTTCGATTACATCACAGTTCACGGTGAAGGCCACTGGAACTCCGTCGCTCGCTACACAGGCATGCAAACATTCATACTGAGATGGTTGAACTACTTGCGTCCCAACGTTCGACGCGGGAACATAACGCTCCAAGAACAGCTCATGATTCTTGACCTCCATTCCCGATGGGGCAACAGGTACTATACATCATCATCATCATTATCATCGCTTGTGTTTATTCTTGAACATGCTGAACATTTACCTGGGAGAACAGACAACGAGATTAAGAACTACTGGAGAACGAGAGTGGTAAAGCAGGCTAAGCAACTGAAATGTGACGTCAACAGCAAACAATTCAGAGACACGTTGCGTTTTGTGTGGATGCCACGTATGCTAGAACGGATTCAGGCTCAGGCCTCATCATCGGGCCAAGCCCAAACCGCCTTAATGTCCAACGTTCAAGCCCACAGCGACCCTTGTGGTGGAGCCACCGCCACCGCCACTGCCTCGGCCAGTGACGCAGGTTTTCTGTCAGAGGCCTCATCGGCGGCTGATGTCCACGCCCAGTCTCTCTCTGACTCCGGCGCGTCTTATAGTTTAATGGGTGGTGGAAGTTGGTGTTCGCATGGTGCAGAAGAAGGTTATGGCAGGGTATGGGAAGAGAGAAACAATGGGTACTCGGAGATAGCAGGAAGTGGTTTTGGTGGTGTTGACATGTGGACGGAGGAGAATATTTGCTTCTTGCAGCAGCAGCTCGCTGATGACTTGTGA 858 0.4965 MERSLSENGSSGTYGSSEEEMSITKGPWTEEEDSVLFDYITVHGEGHWNSVARYTGMQTFILRWLNYLRPNVRRGNITLQEQLMILDLHSRWGNRYYTSSSSLSSLVFILEHAEHLPGRTDNEIKNYWRTRVVKQAKQLKCDVNSKQFRDTLRFVWMPRMLERIQAQASSSGQAQTALMSNVQAHSDPCGGATATATASASDAGFLSEASSAADVHAQSLSDSGASYSLMGGGSWCSHGAEEGYGRVWEERNNGYSEIAGSGFGGVDMWTEENICFLQQQLADDL 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02031 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 113 136 IPR017930 -
Vimu6g02031 285 ProSiteProfiles Myb-like domain profile. 69 132 IPR001005 -
Vimu6g02031 285 SMART sant 73 134 IPR001005 -
Vimu6g02031 285 SMART sant 24 70 IPR001005 -
Vimu6g02031 285 Pfam Myb-like DNA-binding domain 28 81 - -
Vimu6g02031 285 SUPERFAMILY Homeodomain-like 22 128 IPR009057 -
Vimu6g02031 285 Gene3D - 24 73 - -
Vimu6g02031 285 MobiDBLite consensus disorder prediction 1 26 - -
Vimu6g02031 285 ProSiteProfiles Myb-like domain profile. 20 68 IPR001005 -
Vimu6g02031 285 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 20 208 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vimu6g02031 285 CDD SANT 27 68 IPR001005 -
Vimu6g02031 285 MobiDBLite consensus disorder prediction 1 23 - -
Vimu6g02031 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 72 IPR017930 -
Vimu6g02031 285 Gene3D - 78 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02031 Vimu-Chr6 18194016 18195091 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02031 8 284 MYB Transcription Factor Family AT2G47190 41.438 1.80e-66 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu6g02031 Myb_DNA-bind_6 1.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02031 K09422 - gmx:100819467 353.599