Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02030 GAGGTGAATAGTGAAGACACTAGAAAAGGTGCATGGAGCGTTGAAGAGGACACTCTTCTCCAAAATTACGTCGCCACCCACGGCGACGGTCGCTGGAATTCCGTCGCACGCTGCCTTAAGAGATCAGGGAAAAGTTGCAGGTTGAGATGGTTAAACTACTTGCGGCCCGATGTTCGTCGTGGAAATATAACACTCCAGGAACAGATAACCATTTTGGACCTTCAATCTCGGTGGGGCAATAGGTGGTCGAAAATTGCTCGGCATCTTCCCGGTAGAACGGACAACGAAATAAAGAATTATTGGAGGACTCGTGTGCTTAAGCAAGCAAGGAATCTGAAGTGTGACGTGGACAGTGAACAGTTCAAAGATGCCTTACGTTACATGTGGATGCCCCGTATGATTGAGCAGATTCAACCGTCATCGGAAACTCACGACCCGCCCCATGTGTCCCCCTCCGAACTTTACCCGAGCCCAACTCCTTGGCTCCATCACCAAAACGGGTTACACGGTTCGTGTTCAGGTTCCAATGCCTTGGACTTATCAAGTGCCAAGTTGGAGGCTCCTTCAGAGTGTGAAGATATGGGTCATAATAATGTTTCAGTTCCGGGAGTGTGTGAAAATATGAATGATCGAGAGTTGGAACAGGGGAATATCACGCTACCTTTTGCTGGTGGGGACTCAATGGAGAGTTTGTGGGATGATGAGAATCTGTGGCTTATGCAGCAACTTTGTGATGATCTGGAAATTAAAGACAATTTCCTTGCGTGA 768 0.4792 EVNSEDTRKGAWSVEEDTLLQNYVATHGDGRWNSVARCLKRSGKSCRLRWLNYLRPDVRRGNITLQEQITILDLQSRWGNRWSKIARHLPGRTDNEIKNYWRTRVLKQARNLKCDVDSEQFKDALRYMWMPRMIEQIQPSSETHDPPHVSPSELYPSPTPWLHHQNGLHGSCSGSNALDLSSAKLEAPSECEDMGHNNVSVPGVCENMNDRELEQGNITLPFAGGDSMESLWDDENLWLMQQLCDDLEIKDNFLA 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02030 255 Gene3D - 11 59 - -
Vimu6g02030 255 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 3 172 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vimu6g02030 255 SMART sant 8 56 IPR001005 -
Vimu6g02030 255 SMART sant 59 107 IPR001005 -
Vimu6g02030 255 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 58 IPR017930 -
Vimu6g02030 255 Gene3D - 64 105 - -
Vimu6g02030 255 FunFam Myb transcription factor 9 59 - -
Vimu6g02030 255 CDD SANT 11 54 IPR001005 -
Vimu6g02030 255 CDD SANT 64 103 IPR001005 -
Vimu6g02030 255 ProSiteProfiles Myb-like domain profile. 55 105 IPR001005 -
Vimu6g02030 255 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 109 IPR017930 -
Vimu6g02030 255 Pfam Myb-like DNA-binding domain 9 54 IPR001005 -
Vimu6g02030 255 Pfam Myb-like DNA-binding domain 60 103 IPR001005 -
Vimu6g02030 255 ProSiteProfiles Myb-like domain profile. 4 54 IPR001005 -
Vimu6g02030 255 SUPERFAMILY Homeodomain-like 7 101 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02030 Vimu-Chr6 18182544 18183576 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02030 6 246 MYB Transcription Factor Family AT2G47190 46.947 1.25e-68 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu6g02030 Myb_DNA-bind_6 3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02030 K09422 - gmx:100797220 352.829