Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02017 ATGGATGACTGTTGTGCTGTTTGCGCAGAGCCTTTGGAATGGGTCGCCTACGGACCCTGTTTGCACCGGGAGGTGTGCTCCACGTGCGTCGCTCGCCTCCGTTTTATATGCGACAATCCCTGTTGCTGCATCTGCAAGACCGAATGCAACCACGTATTCGTCACCAAGCCTTTAATCCTGTCGATGTTGATAGCAGGGCTTGCTCTGCTAAGTATACGTTATTGTAATCTGTGCTATCTTTCGATGTTGATATTCAATTTTACTGCGTACTGCCAGGCTCTAGGAGATTATACAAAGATGATTAATGATTTTGCTGCCCTTCCTTCGGAGGTAAGGGAGGGCAAGATTGGATCATATTGGTACCATGAGGATACAAATGCATTTTTTGATGATGTGGACCATTACAAGATGATCAAGGCTATGTGTAGACTTTCGTGCAGTATGTGTGACAAGACGGAGGAACAACCACAGGGTTCTGCTTCAAGGCGACGAGAACAGTTTAAGAATATAGGGCAGTTGAAGGGTCATATGTTCCACCGTCACAAGTTGCATATGTGCAGTTTGTGTTTGGAGGGCAGGAAGGTTTTTATATGTGAGCAAAAGCTATATACCAGAGCACAGTTGAATCAACACATAAGCACAGGTGATTCTGAGGTGGATGGAAGTGAGAGTGAGAGAGGTGGTTTCATGGGGCATCCCATATGTGAATATTGCAGAACCCGATTTTATGGAGACAATGAATTGTACATTCACTTCCGTAAAGAGCACTTCTTATGTGAAGATGAGGCTTGTCTTGCTAAGAAATTTGTTGTTTTTCAATCTGAAGCAGAGATGAAGAAGCATAATGCTATCGAACATGGAGGACGGATGTCACGGTCTAAGCGGAATGCTGCTCTTCAGGCATCTACATTCCCTCTGTTACAGATTCCAACTAGCTTTCGATACAGACATGGTAATGAACAAGAGCAACGCCGTGGAAGAAATCGTTCTTTTCGTCGTGATTTTACTGAAAACCAACTTGCAATGGCTATTGAAGCTAGTCTAGAAACAGCTAATGTAGAGCAAACATTTCGTAATCAATCAGCATCAGGTAGTGGGCAAGTTGCTGTTGATGATGGGAATGGAGACATTGATTCTCTCATTCAGCCATTTGAATCACTGGCTGTCGCTGGTTCTGAAGCATCTTCAAGATACCTTCAAGCCTTGGGACATAGCTCAAGGAGTGGAGCTCTGGAGGATTCTTCCTTTCCACCACTACCCATAACATCCAATAATGGCCATCAAGGATCCAAACAGGAAGTGGAAGGCTCATCTAGTAATTCCATGGCTGCACGTCTGCGTCGTCATAACAATAGAACTGTAACAGTTATTAATTCTGGTAATGCTTGGCCAGCAGCAGGTCGTGGACTGGTACAACAGTCAAGTAATCCTTCACAATTTCGACATTCATCAAATAATGCTCTGGATCTTTCTCGTAATTCTGGGCAGACAAAGAAGACTGTTATTAACAGTGGACTTTCACCATCAACTTATGCTGGTACTATTCAGTCTACCCAAAGAACTTCTCGTGGACACTTACCTGGTGGTTCATCGAGGGACACACGTGACAATGTTAGAATTGTTCACTCTGCATCTGCCCCAAATCTCATGGAGAACAACTCTCTTGAAGCTTCACTATCTGATTTTCCTCCTGTTTCTGCTGCACAAGCGAGCAAGATAGCTGCCAGCAGTCATTCACCATCGAATGTGGAAAATGTTCAGTCTGCTAATCAGTCCCTGGTTGAAAAGATTCGACGTGCTCTTGATTTTGATGAGGAAAGATACAGTATGTTTAAGGACATATCTGCCCAATATGGCCAAGGCACAATAGATACGGAAACGTATATGGACTATGTGCAGAACTTTGGCTTGTCTCGTCTTGTGCTTGAGTTGGCAAGATCATGCCCTGATACTCAGAAGCGGGCAGAGCTTGTTAGTGCTAGCTTGCAAAGAGATGTTTTACAGGAAAATAACTTGGTTCAAAGCAGCACAAGCACCCATCGCAAAGACAGTAATGTAAACAAGAAAGGTAAAGGTAAGTCTGTAGATAGTAGGGGGAGTAACCCCACACAGAAATTAGCAGATAACTTTTTAAGCACCGTACATCAGCTACAGTCAAATTATAAATCTTCAGAAGAGAAGGTGGAGGTGCTATCAAGGGATGATTACCGAAGTGACAGGGGCAAATTAAAATTCGAACAGCGTACTGATACCAATTCTGAAAGTCAACCTGCGGTGAAGCTTAGTGGGAAGACTGAAACATCAAATGGCAGTTTATATACTCAAGTTAGAGAGGATGGTGGTTGTGGGAACAAGCAACGCAAGAAAGGTTCAAAGTTCCTGAGAGTGCGACTTGGTGATGGTTCTGCTTCGGCCCTTTTTGATCAACCTGATCCTGGAAAAACGGACCGCTCAGAAGTTAACGATGAACCTGGAGGAGGGCCACCTGTGCGTGGTGTTTGGCGAAAAGGGGGGGGTCAGAAACTTTTTCCCTAA 2535 0.4414 MDDCCAVCAEPLEWVAYGPCLHREVCSTCVARLRFICDNPCCCICKTECNHVFVTKPLILSMLIAGLALLSIRYCNLCYLSMLIFNFTAYCQALGDYTKMINDFAALPSEVREGKIGSYWYHEDTNAFFDDVDHYKMIKAMCRLSCSMCDKTEEQPQGSASRRREQFKNIGQLKGHMFHRHKLHMCSLCLEGRKVFICEQKLYTRAQLNQHISTGDSEVDGSESERGGFMGHPICEYCRTRFYGDNELYIHFRKEHFLCEDEACLAKKFVVFQSEAEMKKHNAIEHGGRMSRSKRNAALQASTFPLLQIPTSFRYRHGNEQEQRRGRNRSFRRDFTENQLAMAIEASLETANVEQTFRNQSASGSGQVAVDDGNGDIDSLIQPFESLAVAGSEASSRYLQALGHSSRSGALEDSSFPPLPITSNNGHQGSKQEVEGSSSNSMAARLRRHNNRTVTVINSGNAWPAAGRGLVQQSSNPSQFRHSSNNALDLSRNSGQTKKTVINSGLSPSTYAGTIQSTQRTSRGHLPGGSSRDTRDNVRIVHSASAPNLMENNSLEASLSDFPPVSAAQASKIAASSHSPSNVENVQSANQSLVEKIRRALDFDEERYSMFKDISAQYGQGTIDTETYMDYVQNFGLSRLVLELARSCPDTQKRAELVSASLQRDVLQENNLVQSSTSTHRKDSNVNKKGKGKSVDSRGSNPTQKLADNFLSTVHQLQSNYKSSEEKVEVLSRDDYRSDRGKLKFEQRTDTNSESQPAVKLSGKTETSNGSLYTQVREDGGCGNKQRKKGSKFLRVRLGDGSASALFDQPDPGKTDRSEVNDEPGGGPPVRGVWRKGGGQKLFP 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02017 844 ProSiteProfiles Zinc finger RING-type profile. 5 46 IPR001841 -
Vimu6g02017 844 MobiDBLite consensus disorder prediction 669 705 - -
Vimu6g02017 844 MobiDBLite consensus disorder prediction 467 537 - -
Vimu6g02017 844 SMART c2h2final6 144 181 IPR013087 -
Vimu6g02017 844 SMART c2h2final6 257 286 IPR013087 -
Vimu6g02017 844 SMART c2h2final6 233 256 IPR013087 -
Vimu6g02017 844 CDD RING-HC_ZNF598 3 54 IPR041888 -
Vimu6g02017 844 MobiDBLite consensus disorder prediction 468 528 - -
Vimu6g02017 844 MobiDBLite consensus disorder prediction 726 749 - -
Vimu6g02017 844 ProSitePatterns Zinc finger C2H2 type domain signature. 235 256 IPR013087 -
Vimu6g02017 844 MobiDBLite consensus disorder prediction 750 775 - -
Vimu6g02017 844 MobiDBLite consensus disorder prediction 721 844 - -
Vimu6g02017 844 Coils Coil 714 734 - -
Vimu6g02017 844 MobiDBLite consensus disorder prediction 408 443 - -
Vimu6g02017 844 PANTHER ZINC FINGER PROTEIN 598 1 754 IPR044288 GO:0061630|GO:0072344
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02017 1 839 C2H2 Transcription Factor Family AT3G62240 46.086 0.0 703
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02017 K22381 - gmx:100780426 1262.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02017 6 18056655 18060433 Vimu6g02017 6 18056655 18060433 ECH