Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02012 ATGGCTGCACGTGATGCAGTTCAATTGAGAGGAGGACCAAGATGGGAGGTGTTGCAAGGGAGGAAGGATTCTCTGGAGTCAAGTTTCAGTGGAGCTAACCTTTTCATTCCTGCTCCAAATTCCTCTCTAGAGGTTCTCATAGATAACTTTAAGCAACAAGGCCTTGACATAGAAGACTTGAGGATATATGAAGCAGAAGATGAATATCACCATGTCAATGATCGCTACAAGCGGTACACAACATTTAGGAGAATTTTGCGGTTCATTTGCCCTGTTAAGGTTGAGGGAAGGGACAACAAATTTGCACCCCTTGATTTGCAGACCCCAAAAAGGTTTGACAACCAGTATTTTATAAACATTCTTGGAGGTAATGGCTTGTTAGGTTCTGATAATGTTCTTATCAGCCAGGATTTGGATGGAAAGATTACAGAGCATGTTCGAACTTACCTTGATACAATCGCGATTGCCTTTCACACCCAACGTCTCGTTCACGACCACCGCAACGACCACGTTGATACAATGCTTCGAGAACAAGCTTTCCAGTACAGTGTTCGTGTTTATGATTTCTAG 570 0.4298 MAARDAVQLRGGPRWEVLQGRKDSLESSFSGANLFIPAPNSSLEVLIDNFKQQGLDIEDLRIYEAEDEYHHVNDRYKRYTTFRRILRFICPVKVEGRDNKFAPLDLQTPKRFDNQYFINILGGNGLLGSDNVLISQDLDGKITEHVRTYLDTIAIAFHTQRLVHDHRNDHVDTMLREQAFQYSVRVYDF 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02012 189 Gene3D Peroxidase, domain 2 37 149 - -
Vimu6g02012 189 Gene3D - 1 36 - -
Vimu6g02012 189 PRINTS Plant peroxidase signature 119 136 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu6g02012 189 PRINTS Plant peroxidase signature 103 118 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu6g02012 189 PRINTS Plant peroxidase signature 11 26 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu6g02012 189 PRINTS Haem peroxidase superfamily signature 11 23 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu6g02012 189 PRINTS Haem peroxidase superfamily signature 105 120 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu6g02012 189 PRINTS Haem peroxidase superfamily signature 1 11 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu6g02012 189 ProSiteProfiles Plant heme peroxidase family profile. 1 189 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu6g02012 189 Pfam Peroxidase 1 148 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu6g02012 189 PANTHER PEROXIDASE 72-RELATED 1 152 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu6g02012 189 SUPERFAMILY Heme-dependent peroxidases 1 146 IPR010255 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02012 Vimu-Chr6 18021862 18022893 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02012 1 149 Peroxidase AT2G35380 52.381 1.41e-51 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02012 K00430 - gmx:100778051 233.032