Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02011 ATGTTGGTTCAAAAGCTTGGACTGCTTTATCCTACGCCCTGCTCGCTGATTATCCTGCGCATATTTAGCCTCTATCTCGCCGAGATCCTCCTCCTCCGCGCCGCTCTTACTCTCTCAAAGACACGATATCCAGTTGGATTCCAGAAGCATGCCGAAAGTGGAGGACAACATCTTGTAAAAAACTCAACAGGAAACGATGGAAATGGTCGGGCATCTGAAACTGCAAAGCAGGGCATTCAAGCTGTTAAAATTCAGCCCATTGAAGTTCCCGAATTACAAGTGGATGAACTCAAAGAAATTACTGACGGCTTTGGGGAAAGTTCTTTGATTGGAGAGGGATCCTATGGAAGAGTGTATTACGGTGTTCTGAAAAGTGGGCAGGCTGCAGCAATCAAGAAATTAGATGCCAGTAAACAGCCAGATGATGAATTTCTAGCCCAGGTCTCGATGGTTTCACGGCTGAAACATGACAATTTTGTTCAATTGCTTGGTTATTGCATTGACGGAAACTCCCGAATTCTTGCTTATGAGTTTGCATCTAATGGGTCTCTTCATGATATTCTGCATGGTATGCTATATGCAATGACTGGTCAATTGAATGCCAAAAGTGATGTATACAGTTTTGGTGTTGTCCTCCTGGAACTTTTGACGGGAAGGAAGCCTGTTGATCATACATTACCACGTGGGCAACAGAGCTTGGTTACTTGGGCTACTCCAAGACTCAGTGAGGATAAAGTTAGACAGTGTGTAGATGCAAGACTAGGAGGAGATTACCCTCCCAAAGCTGTTGCTAAGATGGCTGCTGTTGCTGCCCTGTGTGTGCAATATGAAGCTGATTTCAGACCAAACATGAGTATTGTTGTCAAAGCTCTTCAACCTTTGTTGAATGCAAGACATGGGCCCGCTGGTGAAGCTTCAAACTAA 924 0.4459 MLVQKLGLLYPTPCSLIILRIFSLYLAEILLLRAALTLSKTRYPVGFQKHAESGGQHLVKNSTGNDGNGRASETAKQGIQAVKIQPIEVPELQVDELKEITDGFGESSLIGEGSYGRVYYGVLKSGQAAAIKKLDASKQPDDEFLAQVSMVSRLKHDNFVQLLGYCIDGNSRILAYEFASNGSLHDILHGMLYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPRLSEDKVRQCVDARLGGDYPPKAVAKMAAVAALCVQYEADFRPNMSIVVKALQPLLNARHGPAGEASN 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02011 307 ProSitePatterns Protein kinases ATP-binding region signature. 110 133 IPR017441 GO:0005524
Vimu6g02011 307 Pfam Protein tyrosine and serine/threonine kinase 109 189 IPR001245 GO:0004672|GO:0006468
Vimu6g02011 307 Pfam Protein tyrosine and serine/threonine kinase 197 291 IPR001245 GO:0004672|GO:0006468
Vimu6g02011 307 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 193 298 - -
Vimu6g02011 307 Gene3D Transferase(Phosphotransferase) domain 1 174 294 - -
Vimu6g02011 307 FunFam PTI1-like tyrosine-protein kinase 3 68 178 - -
Vimu6g02011 307 ProSiteProfiles Protein kinase domain profile. 104 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g02011 307 Gene3D Phosphorylase Kinase; domain 1 65 173 - -
Vimu6g02011 307 SUPERFAMILY Protein kinase-like (PK-like) 90 292 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02011 Vimu-Chr6 18012841 18015934 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02011 80 285 Strubbelig Receptor Gene Family AT3G14350 34.601 7.10e-36 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Vimu6g02011 PK_Tyr_Ser-Thr 2.5e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02011 K13436 - gmx:100499642 277.715