Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02008 ATGTCTGGGAAAATAGTTGTCTCCGTTGTTTCTCTCATTCTTGTGGTAGGTGTTGCAATCGGTGTTGTGGTTACCGTTAATAAGAAGGGTGAGGAATCCTCCATCCACTCCGATCAAAAATCCGTTGAGATTATTTGTCAAAACACTGATGACAAAAACCTTTGCCACAACACTCTCAGCTCCGTTAAGGGTCTTGACGCCGCTGACCCTAAGGCTTACATTGTCACGGCAGTGAAAGCCACCATGGACAGCGTCATCAGAGCGTTCAACATGAGTGACAGGCTCGCCACCGAGCACGCAGACAAAGACAACGGCACAAAAATGGCCATTGATGATTGCAAGGACTTATTACAATCAGCCATCCAAAGTCTTCAACTCAGCACTGACATGGTGCAAAATAACAACATCCATGCCGTGCATGACCAAAGTGCTGATTTCAAGAACTGGCTTAGTGCAGTTATCTCATACCAACAGGCGTGCATGGAAGGATTCGACGATGGCAAAGAAGGTGAGAAGAATATCAAGCAGCAGTTCCAAACAGAGAGCTTAGACAAAGTGCAAAAACTCACTGCCATCACCCTTGATATCGTGAGTGGTTTATCACACATCCTCGAAAAATTTGGGTTGAAGCTAAACCTTAAACCCGCCTCCCGTCGTCTTCTCAGTAAGGACGGGTACCCCACTTGGTTCTCTGCCTCAGATCGCAAGCTCTTGGCTCAACTTGGACGTAAAGGATGGAGATCACACATCACACCTAATGTTGTAGTTGCCCAAGATGGCTCTGGTCAGTTTAAAACCATTGCCGAGGCAATTGCTTCTTACCCCAACAACTTCCAAGGTAGATATAACATCTATGTTAAGGCTGGTGTCTATGATGAATACATCACTGTTCCTAAAAACGCCGTCAATATTCTCCTCTATGGTGATGGCCCTGGAAAAACCATTGTCACTGGTCACAAGAACTTCCGCGATGGTGTGAAGACAATGCAAACTGCCACTTTTGCCAACACTGCTCAGGGATTCATTGCCAAGGCAATGACATTCGAAAACACTGTTGGAGCTGACGGACACCAAGCTGTGGCTTTTAGGAACCAAGGAGACATGTCAGCAATTATTGGCTGCCACATTTTGGGTTACCAAGACACCTTGTATGCCCAAACCAACAGGCAATTCTATCGCAACTGTGTCATCTCTGGCACCATTGACTTCATCTTTGGCACCTCACCCACTGTGATCCAACACTCTGTCATCGTCGTCAGGAAGCCCCTTGACAACCAATTAAACACCATTACTGCAGACGGCACATCCGAGAAGAACATGAACACTGGAATCGTTATCCAGGATTGCGAGATTGTGCCCGAAGCTGAGCTCTTCCCAGTGAGGTTCCAGATTAAGTCATACTTGGGCAGGCCATGGAAGCAGTACTCAAGGACTGTGGTGATGGAATCCACCATCGGTGACTTCCTTCACCCTGAAGGATGGTGCCCTTGGGCAGGCGAATACTTTGAAGACACCTTGTACTACGCTGAGTACAACAATGTTGGACCTGGTGCCGCGGTGGAGGGAAGAATCAAGTGGAAGGGTTATCATGGTCTCATTTCTCGCGAAGAAGCTGCCCAGTTCACCCCTGGCCAATTCCTCCAGGCTGGAGTTGGCTCTGGAGCCGATTGGTTGAAAGCTCTTCATGTTCCTCATGCCCTTGACTTCGTCAAACCTTAA 1719 0.4764 MSGKIVVSVVSLILVVGVAIGVVVTVNKKGEESSIHSDQKSVEIICQNTDDKNLCHNTLSSVKGLDAADPKAYIVTAVKATMDSVIRAFNMSDRLATEHADKDNGTKMAIDDCKDLLQSAIQSLQLSTDMVQNNNIHAVHDQSADFKNWLSAVISYQQACMEGFDDGKEGEKNIKQQFQTESLDKVQKLTAITLDIVSGLSHILEKFGLKLNLKPASRRLLSKDGYPTWFSASDRKLLAQLGRKGWRSHITPNVVVAQDGSGQFKTIAEAIASYPNNFQGRYNIYVKAGVYDEYITVPKNAVNILLYGDGPGKTIVTGHKNFRDGVKTMQTATFANTAQGFIAKAMTFENTVGADGHQAVAFRNQGDMSAIIGCHILGYQDTLYAQTNRQFYRNCVISGTIDFIFGTSPTVIQHSVIVVRKPLDNQLNTITADGTSEKNMNTGIVIQDCEIVPEAELFPVRFQIKSYLGRPWKQYSRTVVMESTIGDFLHPEGWCPWAGEYFEDTLYYAEYNNVGPGAAVEGRIKWKGYHGLISREEAAQFTPGQFLQAGVGSGADWLKALHVPHALDFVKP 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02008 572 SMART PMEI_2 37 196 IPR006501 GO:0004857
Vimu6g02008 572 FunFam Pectinesterase 38 201 - -
Vimu6g02008 572 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 200 IPR035513 -
Vimu6g02008 572 Pfam Pectinesterase 253 549 IPR000070 GO:0030599|GO:0042545
Vimu6g02008 572 SUPERFAMILY Pectin lyase-like 250 551 IPR011050 -
Vimu6g02008 572 CDD PMEI-like_3 45 201 - -
Vimu6g02008 572 ProSitePatterns Pectinesterase signature 2. 397 406 IPR033131 -
Vimu6g02008 572 PANTHER PECTINESTERASE 15 559 - -
Vimu6g02008 572 Pfam Plant invertase/pectin methylesterase inhibitor 41 196 IPR006501 GO:0004857
Vimu6g02008 572 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 201 IPR035513 -
Vimu6g02008 572 NCBIfam pectinesterase inhibitor domain 9 199 IPR006501 GO:0004857
Vimu6g02008 572 Gene3D - 247 568 IPR012334 -
Vimu6g02008 572 FunFam Pectinesterase 247 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02008 Vimu-Chr6 17982604 17984322 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02008 5 565 Carbohydrate Esterase AT3G05610 39.506 4.42e-137 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02008 K01051 - gmx:100781507 944.88