LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu6g02008	ATGTCTGGGAAAATAGTTGTCTCCGTTGTTTCTCTCATTCTTGTGGTAGGTGTTGCAATCGGTGTTGTGGTTACCGTTAATAAGAAGGGTGAGGAATCCTCCATCCACTCCGATCAAAAATCCGTTGAGATTATTTGTCAAAACACTGATGACAAAAACCTTTGCCACAACACTCTCAGCTCCGTTAAGGGTCTTGACGCCGCTGACCCTAAGGCTTACATTGTCACGGCAGTGAAAGCCACCATGGACAGCGTCATCAGAGCGTTCAACATGAGTGACAGGCTCGCCACCGAGCACGCAGACAAAGACAACGGCACAAAAATGGCCATTGATGATTGCAAGGACTTATTACAATCAGCCATCCAAAGTCTTCAACTCAGCACTGACATGGTGCAAAATAACAACATCCATGCCGTGCATGACCAAAGTGCTGATTTCAAGAACTGGCTTAGTGCAGTTATCTCATACCAACAGGCGTGCATGGAAGGATTCGACGATGGCAAAGAAGGTGAGAAGAATATCAAGCAGCAGTTCCAAACAGAGAGCTTAGACAAAGTGCAAAAACTCACTGCCATCACCCTTGATATCGTGAGTGGTTTATCACACATCCTCGAAAAATTTGGGTTGAAGCTAAACCTTAAACCCGCCTCCCGTCGTCTTCTCAGTAAGGACGGGTACCCCACTTGGTTCTCTGCCTCAGATCGCAAGCTCTTGGCTCAACTTGGACGTAAAGGATGGAGATCACACATCACACCTAATGTTGTAGTTGCCCAAGATGGCTCTGGTCAGTTTAAAACCATTGCCGAGGCAATTGCTTCTTACCCCAACAACTTCCAAGGTAGATATAACATCTATGTTAAGGCTGGTGTCTATGATGAATACATCACTGTTCCTAAAAACGCCGTCAATATTCTCCTCTATGGTGATGGCCCTGGAAAAACCATTGTCACTGGTCACAAGAACTTCCGCGATGGTGTGAAGACAATGCAAACTGCCACTTTTGCCAACACTGCTCAGGGATTCATTGCCAAGGCAATGACATTCGAAAACACTGTTGGAGCTGACGGACACCAAGCTGTGGCTTTTAGGAACCAAGGAGACATGTCAGCAATTATTGGCTGCCACATTTTGGGTTACCAAGACACCTTGTATGCCCAAACCAACAGGCAATTCTATCGCAACTGTGTCATCTCTGGCACCATTGACTTCATCTTTGGCACCTCACCCACTGTGATCCAACACTCTGTCATCGTCGTCAGGAAGCCCCTTGACAACCAATTAAACACCATTACTGCAGACGGCACATCCGAGAAGAACATGAACACTGGAATCGTTATCCAGGATTGCGAGATTGTGCCCGAAGCTGAGCTCTTCCCAGTGAGGTTCCAGATTAAGTCATACTTGGGCAGGCCATGGAAGCAGTACTCAAGGACTGTGGTGATGGAATCCACCATCGGTGACTTCCTTCACCCTGAAGGATGGTGCCCTTGGGCAGGCGAATACTTTGAAGACACCTTGTACTACGCTGAGTACAACAATGTTGGACCTGGTGCCGCGGTGGAGGGAAGAATCAAGTGGAAGGGTTATCATGGTCTCATTTCTCGCGAAGAAGCTGCCCAGTTCACCCCTGGCCAATTCCTCCAGGCTGGAGTTGGCTCTGGAGCCGATTGGTTGAAAGCTCTTCATGTTCCTCATGCCCTTGACTTCGTCAAACCTTAA	1719	0.4764	MSGKIVVSVVSLILVVGVAIGVVVTVNKKGEESSIHSDQKSVEIICQNTDDKNLCHNTLSSVKGLDAADPKAYIVTAVKATMDSVIRAFNMSDRLATEHADKDNGTKMAIDDCKDLLQSAIQSLQLSTDMVQNNNIHAVHDQSADFKNWLSAVISYQQACMEGFDDGKEGEKNIKQQFQTESLDKVQKLTAITLDIVSGLSHILEKFGLKLNLKPASRRLLSKDGYPTWFSASDRKLLAQLGRKGWRSHITPNVVVAQDGSGQFKTIAEAIASYPNNFQGRYNIYVKAGVYDEYITVPKNAVNILLYGDGPGKTIVTGHKNFRDGVKTMQTATFANTAQGFIAKAMTFENTVGADGHQAVAFRNQGDMSAIIGCHILGYQDTLYAQTNRQFYRNCVISGTIDFIFGTSPTVIQHSVIVVRKPLDNQLNTITADGTSEKNMNTGIVIQDCEIVPEAELFPVRFQIKSYLGRPWKQYSRTVVMESTIGDFLHPEGWCPWAGEYFEDTLYYAEYNNVGPGAAVEGRIKWKGYHGLISREEAAQFTPGQFLQAGVGSGADWLKALHVPHALDFVKP	572

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu6g02008	572	SMART	PMEI_2	37	196	IPR006501	GO:0004857
	Vimu6g02008	572	FunFam	Pectinesterase	38	201	-	-
	Vimu6g02008	572	SUPERFAMILY	Plant invertase/pectin methylesterase inhibitor	40	200	IPR035513	-
	Vimu6g02008	572	Pfam	Pectinesterase	253	549	IPR000070	GO:0030599\|GO:0042545
	Vimu6g02008	572	SUPERFAMILY	Pectin lyase-like	250	551	IPR011050	-
	Vimu6g02008	572	CDD	PMEI-like_3	45	201	-	-
	Vimu6g02008	572	ProSitePatterns	Pectinesterase signature 2.	397	406	IPR033131	-
	Vimu6g02008	572	PANTHER	PECTINESTERASE	15	559	-	-
	Vimu6g02008	572	Pfam	Plant invertase/pectin methylesterase inhibitor	41	196	IPR006501	GO:0004857
	Vimu6g02008	572	Gene3D	Invertase/pectin methylesterase inhibitor family protein	38	201	IPR035513	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu6g02008	Vimu-Chr6	17982604	17984322	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu6g02008	5	565	Carbohydrate Esterase	AT3G05610	39.506	4.42e-137	412

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu6g02008	K01051		-	gmx:100781507	944.88

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