Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02006 ATGTCTGGGAAAATAATTATTTCCGCTGTTTCTCTCATTCTCGTGGTAGGTGTGGCAATCGGTGTTGTGGTCACCGTTAACAAAAGAAGTGACGAATCCATTGAATCCCATCAAAAATCCGTTGAGATTATATGTCAAAATACCGATGACCAAAAACTCTGCCACAACACTCTTAGTTCTGTTAAGGGTCATGACACAGCTGACCCTAAGGCCTACATCGTCACAGCAGTCAAGGCCACCATGGACAGTGTCATCAAAGCGTTAAACATGAGTGATAGACTCACCACCGAGCACGGAGACATAGACAATGGTACTAAGATGGCCCTTGATGATTGCAAGGACTTGTTGCAATCTGCCATCCAAAGTCTTCAACTCAGCACTGACATGGTGAAAAATAACAACATACATGCGGTGCATGATCAAACTGCTGATTTCAAGAACTGGCTTAGTGCAGTTATCTCATACCAACAGGCGTGCATGGAGGGCTTTGACGATGGAAAAGAAGGTGAGAAGAAGATGAAGGAGCAATTCCAAACAGAGAGCTTAGACCAAGTGCATAAACTTACTTGCATCACCCTTGATATCGTCAGTGGATTGTCACACATCCTTGAGAAATTTGGGTTGAAGTTAAACCTTAAACCCGCCTCTCGTCGTCTTCTCAGTAAGGACGGATACCCCACTTGGTTCTCTGCCTCAGATCGCAAGCTCTTGGCTCAACTTGAACGTAAAGGATGGAGATCACACATCACACCTAATGTCGTAGTTGCCCAGGATGGCTCTGGTCAGTTTAAAACCATTGCCGAGGCAATTGCTTCTTACCCCAACAACTTCCAAGGTAGATATAACATCTATGTTAAGGCTGGTGTCTATGATGAATACATCACTGTTCCTAAGAACGCCGTCAATATTCTCCTTTATGGTGATGGCCCTGGAAAGACCGTTGTCACTGGTCACAAGAACTTCCGCGATGGTGTGAAGACAATGCAAACTGCCACTTTTGCCAACACTGCTCAAGGATTCATTGCCAAGGCAATGACATTCGAAAACACTGCTGGAGCTGACGGGCACCAAGCCGTGGCTTTTAGGAACCAAGGAGACATGTCAGCAATTATTGGCTGCCACATTTTAGGTTACCAAGACACCTTGTATGCCCAAACCAACAGGCAATTCTATCGCAACTGTGTCATCTCTGGCACCATTGACTTCATCTTTGGCACCTCACCCACTGTGATCCAACACTCTGTCATCGTCGTCAGGAAGCCCCTTGACAACCAATTAAACACCATTACTGCTGACGGCACATCTGAGAAGAACATGAACACTGGAATCGTTATCCAGGATTGTGAGATTGTGCCAGAAGCTGAGCTCTTCCCGGTGAGGTTCCAGATTAAGTCGTACTTGGGTAGGCCATGGAAGCAGTACTCAAGGACTGTGGTGATGGAATCCACTATTGGTGACTTCCTTCACCCTGAAGGATGGTGCCCTTGGGCAGGCGAGCACTTTGAAGACACCTTGTACTACGCTGAGTACAACAATGCTGGACCTGGTGCCGCAGTGGAGGGAAGAATCAAGTGGAAGGGTTATCATGGTCTCATTTCTCGCGAAGAAGCTGCCCATTTCACCCCTGGTCAATTCCTCCAAGCTGGAGTTGGCTCTAGAGCCGATTGGTTAAAAGCTCTTCATGTTCCTCACGTCCTTGACTTCGCCAAACTTTAA 1716 0.4662 MSGKIIISAVSLILVVGVAIGVVVTVNKRSDESIESHQKSVEIICQNTDDQKLCHNTLSSVKGHDTADPKAYIVTAVKATMDSVIKALNMSDRLTTEHGDIDNGTKMALDDCKDLLQSAIQSLQLSTDMVKNNNIHAVHDQTADFKNWLSAVISYQQACMEGFDDGKEGEKKMKEQFQTESLDQVHKLTCITLDIVSGLSHILEKFGLKLNLKPASRRLLSKDGYPTWFSASDRKLLAQLERKGWRSHITPNVVVAQDGSGQFKTIAEAIASYPNNFQGRYNIYVKAGVYDEYITVPKNAVNILLYGDGPGKTVVTGHKNFRDGVKTMQTATFANTAQGFIAKAMTFENTAGADGHQAVAFRNQGDMSAIIGCHILGYQDTLYAQTNRQFYRNCVISGTIDFIFGTSPTVIQHSVIVVRKPLDNQLNTITADGTSEKNMNTGIVIQDCEIVPEAELFPVRFQIKSYLGRPWKQYSRTVVMESTIGDFLHPEGWCPWAGEHFEDTLYYAEYNNAGPGAAVEGRIKWKGYHGLISREEAAHFTPGQFLQAGVGSRADWLKALHVPHVLDFAKL 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02006 571 FunFam Pectinesterase 37 200 - -
Vimu6g02006 571 FunFam Pectinesterase 246 568 - -
Vimu6g02006 571 Pfam Pectinesterase 252 548 IPR000070 GO:0030599|GO:0042545
Vimu6g02006 571 ProSitePatterns Pectinesterase signature 2. 396 405 IPR033131 -
Vimu6g02006 571 NCBIfam pectinesterase inhibitor domain 22 198 IPR006501 GO:0004857
Vimu6g02006 571 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 39 199 IPR035513 -
Vimu6g02006 571 SUPERFAMILY Pectin lyase-like 249 549 IPR011050 -
Vimu6g02006 571 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 200 IPR035513 -
Vimu6g02006 571 CDD PMEI-like_3 44 200 - -
Vimu6g02006 571 PANTHER PECTINESTERASE 14 558 - -
Vimu6g02006 571 Pfam Plant invertase/pectin methylesterase inhibitor 40 195 IPR006501 GO:0004857
Vimu6g02006 571 SMART PMEI_2 36 195 IPR006501 GO:0004857
Vimu6g02006 571 Gene3D - 246 567 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02006 Vimu-Chr6 17970653 17972368 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02006 5 564 Carbohydrate Esterase AT3G05610 40.845 1.19e-137 413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02006 K01051 - gmx:100815015 924.465