Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02002 ATGGAAGACGAGCCTTTTCTCACAACAACAACACTCACTTCCCAACGGGCCGATTTCCACTTGCAATCTTCCAAGTCCTTCGACGACGTCACAGCGCCACGCGCCGCCCGTAACGCTGAGATTCAAGAGCACCTCTCCCAACCCTCTCCCTTTCACTCCAAGAAGAAAAAGCTCAGTCGTTGCAAGACAGCACCCGCCCTGGTTAGCATGCGAAACCTCAAACCTAAGACGCCCGAAGTCCCCAAGCCTCAGTCCAGTTCCATAATCCGTCAAGGCATGTGCTTACTCGCCATGTACCTCTGTGTGGGAGTCGCCATTTACTCTTTCAACAGGGAAAATTTCTCCGGCATCGAGACCCACCCCTTGGTCGATGCCCTTTACTTTTGTATAGTTACCATGTGTACCATAGGTTACGGAGACATCGCTCCCTTGACCCCGCTTACAAAGGTTTTCGCTTGTGTCTTTGTGCTGGTGGGGTTCGGCTTTATAGACATACTCCTCAGTGGCCTTGTCAACTTTGTTTTGGATGTGCAAGAGAACATGATCCTCACGGGGCTCCAAATGGGTGCAACTGGGAGGGAGGGCTTTTCTGCCCGGAACTACATCGTTGATGTGGTGAAGGGGAGGATGAGGATCAGGTTGAAGGTTGGTTTGGCGCTTGGTGTTGTTGTGCTTTGTATTGGGATTGGGTGTTTGGTGTTGTACTTTGTGGAGGGCTTGGATTTGGTTGATTCTATTTACTTGTCAGTTATGTCTGTCACAACGGTTGGGTATGGTGACAGGGCGTTTAAGACACTTCCCGGTCGGTTATTTGCTGCTATCTGGTTGCTCTTTTCAACTTTGATGGTGGCACGGGCTTTCCTCTATTTGGCAGAGGCCAGAATTAATAGAAGGCATCGCAGAATGGCCAATAAGGTATTGCAGAGAGAAATTACTGTTGAGGATTTGCTTGCTGCCGATATCAACCACACCGGTTTCATCAGGTTATCATCTCTTGCTTTTCGTACCAATCAAACTTTTAATCTGTCACAGTTTCATTACGATCTTTAA 1050 0.4857 MEDEPFLTTTTLTSQRADFHLQSSKSFDDVTAPRAARNAEIQEHLSQPSPFHSKKKKLSRCKTAPALVSMRNLKPKTPEVPKPQSSSIIRQGMCLLAMYLCVGVAIYSFNRENFSGIETHPLVDALYFCIVTMCTIGYGDIAPLTPLTKVFACVFVLVGFGFIDILLSGLVNFVLDVQENMILTGLQMGATGREGFSARNYIVDVVKGRMRIRLKVGLALGVVVLCIGIGCLVLYFVEGLDLVDSIYLSVMSVTTVGYGDRAFKTLPGRLFAAIWLLFSTLMVARAFLYLAEARINRRHRRMANKVLQREITVEDLLAADINHTGFIRLSSLAFRTNQTFNLSQFHYDL 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02002 349 Pfam Ion channel 96 174 IPR013099 -
Vimu6g02002 349 Pfam Ion channel 224 292 IPR013099 -
Vimu6g02002 349 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 123 314 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vimu6g02002 349 SUPERFAMILY Voltage-gated potassium channels 89 178 - -
Vimu6g02002 349 PRINTS Two pore domain K+ channel signature 131 159 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vimu6g02002 349 PRINTS Two pore domain K+ channel signature 254 263 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vimu6g02002 349 Gene3D - 198 319 - -
Vimu6g02002 349 Gene3D - 70 184 - -
Vimu6g02002 349 FunFam Two-pore potassium channel 3 199 313 - -
Vimu6g02002 349 SUPERFAMILY Voltage-gated potassium channels 206 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02002 Vimu-Chr6 17946028 17947077 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02002 12 331 Ion Channels AT4G01840 62.080 3.82e-136 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02002 K05389 - gmx:100801488 507.294