Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02001 ATGGCATTGTGTGTGATAAGAACAAATCGAGGCCTAGTTAAGCCAGAGAAGGAGACTCCCTTGACCACACTAGATTTGTCAGTGATCGATAGGTTACCTGTTCTAAGATGCAATGCTCAAACCTTGCATGTCTTCAAACACGGTCCTCAAGCAACAAGGGTCATAAAAGAGGCCCTCTCCAAAGCACTTGTTCCCTATTACCCTCTTGCGGGAAGACTCAAAGAATCGCAAATAGGGTGCCTTCAAATTGAGTGCTCAGGTGATGGGGTCTGGTATGTTGAGGCATCTTCTGATTCCACCCTTCACTATCTTAATTTCTTTGATGATCTTCACCCTATTCCTTATCACGATCTTCTTCCTGATGCTCTTCCCGAGACCCAAGGCATCCAACCCCTCGTGCAAATGCAGGTGACACAATTTGGTTGCGGGGGTTTTGTGATAGGCCTCATATTCTGCCACAGCATATGCGATGGTCTTGGTGCTGCACAGTTTCTAAATGCAGTAGGGGAACTAGCTAGGGATCTTGAGAAACCTAGCATTGAACCAGTGTGGCACAGGAACTTCTTTCCATCTTCTCAAACCCCCCAACAAACCGCATTGCCACCAACACCACTCGTTCCTCCTCAAATGCCAGAATACAAACTACAGCATGCTAACATAGACATGCCTCTGGATCAAATCAACCGTCTGAAAAGAGAATTTCAACAAGTGACTGGACTCAATTGCTCGACCTTCGAGATTGTTGCAGCAGCATGTTGGAGCAGTCGAACAAGGGCCATTCGATTCGAGCCAAATACGGAACTGAAGCTAGTTTTCTTTGCAAATTGCCGTCAACTGTTGGACCCAGCTCTGCCCAATGGCTTCTACGGCAATTGTTTCTTCCCAGTGACGATCACGGCTTCGTGTGAGTCACTTAGGAATGCAACAACGGTTGGTGTGGTGAAGCTTATACAAGAAGCCAAGGCCAAGTTAGGCGTGGAATTTCACAAGTACTTGAATGGCGAGCATTTGAATAATGGAGAAGACCCTTTTGCGCCTCCACTCACCTACACCACCATGTTCGTATCTGAATGGGGAAGGCTGGGATTCAACCACGTGGACTACCAGTGGGGCCCACCCGTCCACGTGGTTCCCATCCAAGGGTCTAGCATTATACCAGTGGCCATTGTGGGGTCCATGCCTCTTCCCAAGAAAGGGATTCGTTTGATGACGTGGTGTGTGGAGGAGGCACATCGCGTTCCTTTCCTCCATGAGATGCATGGGGTGATAAACGAGGGACTGAGTATGTAA 1290 0.4814 MALCVIRTNRGLVKPEKETPLTTLDLSVIDRLPVLRCNAQTLHVFKHGPQATRVIKEALSKALVPYYPLAGRLKESQIGCLQIECSGDGVWYVEASSDSTLHYLNFFDDLHPIPYHDLLPDALPETQGIQPLVQMQVTQFGCGGFVIGLIFCHSICDGLGAAQFLNAVGELARDLEKPSIEPVWHRNFFPSSQTPQQTALPPTPLVPPQMPEYKLQHANIDMPLDQINRLKREFQQVTGLNCSTFEIVAAACWSSRTRAIRFEPNTELKLVFFANCRQLLDPALPNGFYGNCFFPVTITASCESLRNATTVGVVKLIQEAKAKLGVEFHKYLNGEHLNNGEDPFAPPLTYTTMFVSEWGRLGFNHVDYQWGPPVHVVPIQGSSIIPVAIVGSMPLPKKGIRLMTWCVEEAHRVPFLHEMHGVINEGLSM 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02001 429 Gene3D - 3 201 IPR023213 -
Vimu6g02001 429 PANTHER ACYL TRANSFERASE 4 4 420 - -
Vimu6g02001 429 Pfam Transferase family 8 379 - -
Vimu6g02001 429 Gene3D - 202 413 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02001 Vimu-Chr6 17935982 17937724 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02001 12 385 Monolignol Biosynthesis Gene Families AT5G48930 28.288 1.26e-36 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02001 - - gmx:100783128 707.983