Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01998 ATGGGATGGACGTGGACGCCTCGTCAACCTTCGCTTTGGCGCACTTTCGGAAAACACGCATTGCAATTTTTCTATTTTCTTTTTTATGCTACGTTTCAGTGTTTACAGTTTCGTAATTATTCTAAAATATCCTACTGGGTCCCGGAGTTTAATCGTGAAGGTTTAAAAGGACAACCGCACAAGAACTTGGTGGACAAAATCTTTTCACTGAGCTTTTTACCCGAGCTCCAACCTCACAGTGATTCTGCAACTTTTTATTACTCATTCCAGAGTTCGTTGTCCTTGACTTGGAGGTGGAGAGTAAAGCAGTCACTGATTTCTTATATGATGAGGCAGGGGAATGCTTTGCATGATGAAGAGCTTAAACATGACGAGAGAACGCCACCAGAGAGTACCACAAACGGGGAAAAGAAAGAAAAGAGACAACAAAAGGAAAAGGCTGAAAGGGTTCCATATCACAGGCTGTTCTTATTTGCAGACTCCACTGACATCATTTTGATGGTTGTTGGCACCATTGGAGCCATTGGAAATGGCCTTGGAATGCCTCTCATGGCTTTTCTTTTCGGGGAACTCATTGATAGCTTTGGCAATAACCAGTTTGGCCCCAACGTTGTCAAACAAGTTTCCAAGGTCTGCCTGAAATTTGTGTACTTAGCAATAGGCACTGGTATAGCTGCTTTCCTCCGGGAAAGACAGGCTGCAAGAATAAGGGGCTTGTATTTGAAAGCTATACTAAGACAGGATATTGCTTTCTTTGACAAGGAAACTAACACTGGAGAGGTGATAGGGAGGATGTCAGGTGACACTGTTCTCATACAAGATGCTATGGGTGAGAAGGTTGGGAGATTTCTGCAGCTAGTAGCAACCTTTTTCGGGGGATTTGTGATTGCATTTATCAAAGGGTGGCTTCTAACTGTTGTCATGTCATCCGTCGTTCCACTTGTTGGTGCTGCTGCCGCTTCTATGGCCCTTGTCATAGGAATGATGGCAAGCCGAGGCCAAAACGCTTATGCGAAAGCTTCACAAGTAGTTGAAGAAACAATAGGTTCAATAAGAACTGTTGCATCCTTTACAGGGGAAAAGCAAGCAGTGTCTACTTACAAGAAATTTCTTGCTGACGCTTATAAATCAGGAGTTCATGAAGGTTTAGTAAGTGGAGTGGGTTTCGGCATGGTTTTGTTCGTTATGTTCTGCGGTTATGGTTTGTCTGTATGGTTTGGCGCAAAGATGATAATGGAAAGAGGATATGGTGCTGGTGCGGTGGTCAATGTGTTCGTTGCTGTGTTAAATGCTTCCATGTCTCTGGGTCAGGCATCTCCTTCTATGAACGCTTTTGCTGAAGGTCAAGCAGCAGCTTATAAAATGTTTCAGACAATTGAGAGAAAGCCAGTGATAGATGCTTATGACCCAAATGGAAAAAACCTAGAGGATATTCATGGTGAAATCCATTTGAGGAATGTTTATTTCAGCTATCCAGCCAGACCTGAGGAGTTGATATTCAATGGATTCTCTCTTCATATAGCTAGTGGCACTACGGCAGCTTTAGTAGGACAAAGTGGAAGTGGGAAATCTACAGTTATCAGTTTAATTGAAAGATTCTACGATCCACAGGCTGGTGAAGTTCTTATTGATGGCACTAATGTGAAAGAATTTCAGCTCAGGTGGATCAGAGGAAAAATTGGCCTTGTTAGTCAGGAGCCAGTGTTATTTGCATCTAGCATTAAGGATAATATTGCGTATGGAAAAGATGGAGCGACACTTGAAGAGATAAGAGGTGCAGCTGAACTTGCAAATGCTGCTAAATTCATTGACAAACTGCCACAGGGATTGGACACGATGGTTGGTGAGAATGGAACTCAATTATCCGGTGGACAGAAGCAGCGCATTGCCATTGCCAGAGCAATCCTAAAAGATCCAAGAATTTTACTTTTAGATGAAGCAACAAGTGCACTTGACGCAGAGTCAGAAAGAATAGTGCAAGAAGCTCTAGACAGGATCATGGTCAACAGAACTACTGTTATTGTCGCACATCGCCTGAGCACGGTGAGAAAGGCTGATATGATTGCAGTAATTCATAGAGGGAAAATGGTTGAAAAAGGAAGACACGAAGAATTAACCAAAGATCCTGAGGGAGCATACTCTCAACTGATACGTTTGCAAGAAGGAAACCAGGCATCAGAAGAAACAAGAGACAACCAAAACAAGAGGGAAATTTCCTCAGAATCCTTTAAAAAGTTGAGTCAAAGGCTGTCGTTTCGAAGATCAGGGTCATCTCTGGGTAACAGTAGCCGCCACTCTTTTTCAGTTTCATTTGGTTTGCCTACAGCAATTAGCATCCCTGATCCTGACCTTGAAAACTCACAGCCTCGAGAAAAATCGCCAGAAATTTCACTCTGGCGCCTTGCTTCCCTCAATAAGTCGGAGATTCCAGTGCTTCTGATTGGATGTGTAGCTGCAATAGCAAATGGTGTTATATATCCAATATTTGGCGTATTGCTCTCCAGAATTATCAAAACATTTTTTAAACCTTTTCCAGAGATGAAAAGTGATTCCCAGTTTTGGGCACTCATGTTTGTGATCCTTGGAATTGCATCTTTAATAGCAATTCCAGCCAGAAGTTACTTTTTCTCTGTGGCGGGCAGTAAGTTAATCCGACGAATCAGGCTCATTTGTTTTGAGAAGGTGATAAACATGGAAGTTGGGTGGTTTGATGAGCCTGAGAACTCTAGTGGTGCAATTGGTGCAAGGCTATCAGCAGATGCTGCATCAGTGCGAGCCCTTGTTGGTGATGCTCTAGGACTATTGGTTCAAAATATAGCGACAGCATTGACAGGTTTGATTATTGCTTTCGTTGCGAGCTGGCAATTGGCGTTTATTGTTCTTGTTTTGGTTCCCCTTTTTGGAATGAATGGCTATATCCAAATGAAATTCATGAAGGGATCCAGCACAGATGCAAAGATGATGTATGAGGAAGCAAGCCAAGTTGCTAATGATGCAGTTGGAAGCATACGAACAGTAGCTTCTTTCTGTGCAGAGGAGAAAGTTATGGAACTCTACAGGAAAAAATGTGAAGGTCCCGTGAAAGCAGGGATTCGACAAGGCTTGATAAGTGGAACAAGTTATGGTCTTTCATTTTTCTTGTTCTTCAGTGTCTATGCAACCAATTTCTATGCCGGAGCCAGACTTGTGGAAGCTGGCAAGGCATCATTCACAGATGTTTTTCTGGTTTTCTTTGCTTTAACTATGTCATCTGTTGGAATTTCCCAATCAAGCTCCCTTGCTCCTGATTCTAACAAAGCCAAGATAGCAACTGCTTCCATATATAGAATAATTGACAGGAAATCGAAGATAGACCCTAGTGATGAAGTCGGTAGCACACTGGATAGTGTAAAAGGAGAAATACAGATTCGTCATGTAAGCTTTAGGTATCCATCAAGGCCAGATATACAAATTTTTCGAGACTTACATTTGACCATCCATTCGGGCAAGACTTTGGCCATTGTTGGTGAAAGTGGGAGTGGAAAATCCACGGTGATTGCCTTGTTACAGAGATTTTATGATCCTGATTCTGGTCAAATTACAATTGATGGGGTAGAAATTCAGAATTTAAAACTCAAGTGGTTAAGGCAGCAGATGGGACTTGTAAGCCAAGAGCCAGTCTTGTTCAATGCCAGCATCCGTGACAATGTCGCATATGGAAAGGAAGGCAATGCTAATGAAGCAGAAGTCATAACCGCTGCCAAATTGGCCAATGCACATGGCTTTGTTAGTGGCTTACAACAGGGTTATGATACAGTAGTGGGAGAAAGGGGAATCAAACTGTCTGGTGGGCAGAAGCAAAGGGTGGCCATTGCACGTGCTATAATTAAAAGTCCAAAGATTCTGCTACTTGACGAGGCCACAAGTGCACTGGACGCTGAGTCAGAGAGAGTTGTTCAAGATGCCTTAGATAAAGTGATGGTGAACAGGACCACTGTGGTAGTGGCTCATCGTTTATCTACAATAAAAAATGCAGATGTGATAGCAGTGGTAAAAAATGGCATTATAGTGGAAAAAGGAAGGCATGAAACACTAGTTAATATCAAGGACGGGTTTTATGCTTCCTTGGTCCAACTTCATACAAGCTCTACTACACCATGA 4140 0.4251 MGWTWTPRQPSLWRTFGKHALQFFYFLFYATFQCLQFRNYSKISYWVPEFNREGLKGQPHKNLVDKIFSLSFLPELQPHSDSATFYYSFQSSLSLTWRWRVKQSLISYMMRQGNALHDEELKHDERTPPESTTNGEKKEKRQQKEKAERVPYHRLFLFADSTDIILMVVGTIGAIGNGLGMPLMAFLFGELIDSFGNNQFGPNVVKQVSKVCLKFVYLAIGTGIAAFLRERQAARIRGLYLKAILRQDIAFFDKETNTGEVIGRMSGDTVLIQDAMGEKVGRFLQLVATFFGGFVIAFIKGWLLTVVMSSVVPLVGAAAASMALVIGMMASRGQNAYAKASQVVEETIGSIRTVASFTGEKQAVSTYKKFLADAYKSGVHEGLVSGVGFGMVLFVMFCGYGLSVWFGAKMIMERGYGAGAVVNVFVAVLNASMSLGQASPSMNAFAEGQAAAYKMFQTIERKPVIDAYDPNGKNLEDIHGEIHLRNVYFSYPARPEELIFNGFSLHIASGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGTNVKEFQLRWIRGKIGLVSQEPVLFASSIKDNIAYGKDGATLEEIRGAAELANAAKFIDKLPQGLDTMVGENGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMVNRTTVIVAHRLSTVRKADMIAVIHRGKMVEKGRHEELTKDPEGAYSQLIRLQEGNQASEETRDNQNKREISSESFKKLSQRLSFRRSGSSLGNSSRHSFSVSFGLPTAISIPDPDLENSQPREKSPEISLWRLASLNKSEIPVLLIGCVAAIANGVIYPIFGVLLSRIIKTFFKPFPEMKSDSQFWALMFVILGIASLIAIPARSYFFSVAGSKLIRRIRLICFEKVINMEVGWFDEPENSSGAIGARLSADAASVRALVGDALGLLVQNIATALTGLIIAFVASWQLAFIVLVLVPLFGMNGYIQMKFMKGSSTDAKMMYEEASQVANDAVGSIRTVASFCAEEKVMELYRKKCEGPVKAGIRQGLISGTSYGLSFFLFFSVYATNFYAGARLVEAGKASFTDVFLVFFALTMSSVGISQSSSLAPDSNKAKIATASIYRIIDRKSKIDPSDEVGSTLDSVKGEIQIRHVSFRYPSRPDIQIFRDLHLTIHSGKTLAIVGESGSGKSTVIALLQRFYDPDSGQITIDGVEIQNLKLKWLRQQMGLVSQEPVLFNASIRDNVAYGKEGNANEAEVITAAKLANAHGFVSGLQQGYDTVVGERGIKLSGGQKQRVAIARAIIKSPKILLLDEATSALDAESERVVQDALDKVMVNRTTVVVAHRLSTIKNADVIAVVKNGIIVEKGRHETLVNIKDGFYASLVQLHTSSTTP 1379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01998 1379 Pfam ABC transporter 1153 1302 IPR003439 GO:0005524
Vimu6g01998 1379 Gene3D ABC transporter type 1, transmembrane domain 230 1107 IPR036640 GO:0005524|GO:0016020
Vimu6g01998 1379 SUPERFAMILY ABC transporter transmembrane region 149 466 IPR036640 GO:0005524|GO:0016020
Vimu6g01998 1379 ProSitePatterns ABC transporters family signature. 621 635 IPR017871 GO:0005524|GO:0016887
Vimu6g01998 1379 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1128 1372 IPR027417 -
Vimu6g01998 1379 MobiDBLite consensus disorder prediction 720 742 - -
Vimu6g01998 1379 FunFam ABC transporter B family member 1 792 1100 - -
Vimu6g01998 1379 Gene3D ABC transporter type 1, transmembrane domain 116 201 IPR036640 GO:0005524|GO:0016020
Vimu6g01998 1379 MobiDBLite consensus disorder prediction 118 146 - -
Vimu6g01998 1379 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1134 1371 IPR003439 GO:0005524
Vimu6g01998 1379 Gene3D - 480 737 IPR027417 -
Vimu6g01998 1379 PANTHER ABC TRANSPORTER B FAMILY 130 725 IPR039421 -
Vimu6g01998 1379 FunFam ABC transporter B family member 9 154 478 - -
Vimu6g01998 1379 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 168 447 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu6g01998 1379 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 471 720 IPR027417 -
Vimu6g01998 1379 CDD ABC_MTABC3_MDL1_MDL2 482 720 - -
Vimu6g01998 1379 Gene3D - 1124 1378 IPR027417 -
Vimu6g01998 1379 MobiDBLite consensus disorder prediction 724 742 - -
Vimu6g01998 1379 Pfam ABC transporter 501 649 IPR003439 GO:0005524
Vimu6g01998 1379 SMART AAA_5 509 701 IPR003593 GO:0016887
Vimu6g01998 1379 SMART AAA_5 1161 1354 IPR003593 GO:0016887
Vimu6g01998 1379 FunFam ABC transporter B family member 1 1124 1374 - -
Vimu6g01998 1379 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 813 1099 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu6g01998 1379 CDD ABC_MTABC3_MDL1_MDL2 1134 1372 - -
Vimu6g01998 1379 SUPERFAMILY ABC transporter transmembrane region 799 1118 IPR036640 GO:0005524|GO:0016020
Vimu6g01998 1379 FunFam ABC transporter B family member 1 472 721 - -
Vimu6g01998 1379 CDD ABC_6TM_Pgp_ABCB1_D1_like 167 455 - -
Vimu6g01998 1379 ProSitePatterns ABC transporters family signature. 1274 1288 IPR017871 GO:0005524|GO:0016887
Vimu6g01998 1379 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 482 718 IPR003439 GO:0005524
Vimu6g01998 1379 CDD ABC_6TM_Pgp_ABCB1_D2_like 802 1117 - -
Vimu6g01998 1379 Pfam ABC transporter transmembrane region 168 433 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu6g01998 1379 Pfam ABC transporter transmembrane region 812 1084 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01998 Vimu-Chr6 17919677 17925241 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01998 128 1378 Calmodulin-binding Proteins AT2G36910 42.902 0.0 1013
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01998 K05658 - gmx:100802547 2173.67