Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01991 ATGGAGAACCGACACCACCGTGAATTGACCTTCTTAAGCTCCGGCGGCGACTTCCTCAATCCCCCTTTTGATCACACAACCCGAAACACCGATTCTCCCATCAAAGAAATGGACTTCTTCTCATCGTCACCTTCATCTCCGGCTACTCATAAAACCAACAACACCAATCATCATCACAACCATGTTGGACTTCAAGATCACACTCATCGACAAGGATCACCACCATACGTCTCTCATCACCCTGTAAACACCGGACTGAATTTAACTTGTGCAAGTACTGGACTCACAAAAGAAGAAAATGGTGAAAATCATGAAGCTGAGCTGAGTTCCATTGAAAGTCAATTGCGGAGACTACAGGAAGAGAATCGTAAGTTGAGAACTGTGCTGGACCAGATTACCAGAAGCTATACCCAGCTACAAGCTCAGTTATTCATCACTCTGCAGAAACAAAAGCTTCCTCAGAATACGGAGGCAAATGGGATGGTGTCGGAACAAAAAAATGTGGACCCAGCTGGAGTATGCAGAAAGTTAGAGGTGGTAAATGAAGCATCAGTTTGTGATGAAAAGACTGATGGTGAGGTATCGGTTTGTCGCTCAAACAAGACAGATGATGATGATGAGGCTCCTCAATTGATCAAACTGAACCTTGGAAAACAGGCTTGTCCCGATGCTGCAGAAGATGTTCTTGACCGGTCCTCCTCACAGAGCTGGGGCTCATCCAAGTTAGAAGAACAACCCAAAACTGCAGAACAAGTTTCTGCAGATCAGATTCCTCTCAGGAAAGCCAGGGTTTCCGTACGAGCTAGATCAGAAGCTCCACTGATAAGCGATGGATGTCAGTGGAGGAAATATGGACAGAAAATGGCAAAGGGTAACCCTTGCCCTCGTGCTTACTATCGCTGTACTATGGCTGTAGGATGCCCAGTGCGCAAACAGGTGCAGAGATGCGTAGAAGATAAGACGGTGTTGATAACAACCTACGAAGGCAATCACAATCACCCTCTGCCACCAGCTGCCACTGCCATGGCAAGTACCACGTCAGCAGCCGCCGCCATGCTCTTGTCAGGTTCAACAGCCAGCAAGGAAGCACTCACAAACTCTGCAGGATATTACTCTTCACTTCCCTACGCTTCAATGGCAACCCTATCAGCTTCAGCACCATTCCCGACCATTACTCTCGACTTGACCCAAAACCCCAACGCCATGCACCTCCACCGCCTACCACCCCATGCTACTACGTTTCCTCTCCCACTTCATGCTTCCGGTGGTCACCAACTTCTAGGCCACCCCTTGTTCTTCTCACAGAAGCTTCCACCTGCAGCATCGCCCCTACTTCATGCTCGACAAACTTCATCTATGGTCGAAACGGTTAGTGCAGCCATTGCTTCGGATCCAAACTTCACTTCAGCTTTGGCAGCAGCAATCTCCTCAATCATTGGAATACCTAGTAACAACAACGGAACTGGTGGTGCCATTGGGTCACCGCAGCTTCCTCAGTCATGCACTACTTTCTCCACCAACTAG 1524 0.4836 MENRHHRELTFLSSGGDFLNPPFDHTTRNTDSPIKEMDFFSSSPSSPATHKTNNTNHHHNHVGLQDHTHRQGSPPYVSHHPVNTGLNLTCASTGLTKEENGENHEAELSSIESQLRRLQEENRKLRTVLDQITRSYTQLQAQLFITLQKQKLPQNTEANGMVSEQKNVDPAGVCRKLEVVNEASVCDEKTDGEVSVCRSNKTDDDDEAPQLIKLNLGKQACPDAAEDVLDRSSSQSWGSSKLEEQPKTAEQVSADQIPLRKARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCVEDKTVLITTYEGNHNHPLPPAATAMASTTSAAAAMLLSGSTASKEALTNSAGYYSSLPYASMATLSASAPFPTITLDLTQNPNAMHLHRLPPHATTFPLPLHASGGHQLLGHPLFFSQKLPPAASPLLHARQTSSMVETVSAAIASDPNFTSALAAAISSIIGIPSNNNGTGGAIGSPQLPQSCTTFSTN 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01991 507 MobiDBLite consensus disorder prediction 229 252 - -
Vimu6g01991 507 ProSiteProfiles WRKY domain profile. 270 336 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu6g01991 507 MobiDBLite consensus disorder prediction 23 53 - -
Vimu6g01991 507 Pfam WRKY DNA -binding domain 277 334 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu6g01991 507 Coils Coil 101 142 - -
Vimu6g01991 507 FunFam probable WRKY transcription factor 31 260 337 - -
Vimu6g01991 507 SUPERFAMILY WRKY DNA-binding domain 268 336 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu6g01991 507 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 97 481 IPR044810 GO:0003700
Vimu6g01991 507 SMART WRKY_cls 275 335 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu6g01991 507 MobiDBLite consensus disorder prediction 1 76 - -
Vimu6g01991 507 Gene3D WRKY domain 260 337 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu6g01991 507 MobiDBLite consensus disorder prediction 225 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01991 Vimu-Chr6 17873433 17878035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01991 94 479 WRKY Transcription Factor Family AT4G04450 43.826 3.18e-84 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu6g01991 WRKY 1.1e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01991 - - gmx:100783661 647.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01991 6 17873433 17878035 Vimu3g01926 3 34230474 34233068 PCT